Co-expression analysis

Gene ID	Ta.27842.1.S1_at
Gene name
Homology with Arabidopsis	Similar to At1g16010: magnesium transporter CorA-like family protein (MRS2-1) (HF=3e-20)
Module size	19 genes
NF	0.25
%ile	41.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.88	94.4	0.94	Ta.27842.1.S1_at	CD869696	-	-	3e-20	At1g16010	magnesium transporter CorA-like family protein (MRS2-1)	O.I.	H.G.	S.X.	Please select
0.54	75.5	0.95	TaAffx.71213.1.S1_at	BE492034	ELF3 protein	-	1e+0	At3g50610	unknown protein	O.I.	H.G.	S.X.	Please select
0.39	56.1	0.96	Ta.10240.1.S1_x_at	CD454934	-	-	4e-42	At4g35020	ARAC3 (ARABIDOPSIS RAC-LIKE 3)	O.I.	H.G.	S.X.	Please select
0.37	53.0	0.95	Ta.10240.1.S1_at	CD454934	-	-	4e-42	At4g35020	ARAC3 (ARABIDOPSIS RAC-LIKE 3)	O.I.	H.G.	S.X.	Please select
0.34	48.1	0.96	Ta.3365.1.S1_at	CD920769	-	-	6e-1	At4g22220	ISU1	O.I.	H.G.	S.X.	Please select
0.31	42.7	0.95	Ta.12106.1.S1_at	BT009522.1	-	-	6e-23	At2g01350	QPT (QUINOLINATE PHOSHORIBOSYLTRANSFERASE)	O.I.	H.G.	S.X.	Please select
0.29	39.2	0.95	Ta.3001.1.S1_at	CK211723	-	-	4e-21	At5g56140	KH domain-containing protein	O.I.	H.G.	S.X.	Please select
0.26	33.6	0.94	TaAffx.128545.1.S1_at	BG908396	-	-	4e+0	At4g16380	metal ion binding	O.I.	H.G.	S.X.	Please select
0.22	27.1	0.95	Ta.6202.1.S1_at	BQ805815	-	-	7e-6	At3g04040	unknown protein	O.I.	H.G.	S.X.	Please select
0.21	25.5	0.95	Ta.18914.1.A1_x_at	CD875211	-	-	2e-1	At2g18915	LKP2 (LOV KELCH PROTEIN 2)	O.I.	H.G.	S.X.	Please select
0.21	25.5	0.95	Ta.6405.1.S1_at	CA643483	-	-	2e+0	At1g27050	ATHB54 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 54)	O.I.	H.G.	S.X.	Please select
0.20	24.0	0.95	Ta.5602.1.A1_at	BJ286052	-	-	5e+0	At3g02480	ABA-responsive protein-related	O.I.	H.G.	S.X.	Please select
0.20	24.0	0.96	Ta.7856.1.S1_at	CD873175	-	-	5e-1	At1g54820	protein kinase family protein	O.I.	H.G.	S.X.	Please select
0.19	22.4	0.96	Ta.460.1.S1_a_at	BG908990	-	-	1e-4	At4g16580	catalytic	O.I.	H.G.	S.X.	Please select
0.18	21.0	0.95	Ta.14532.1.S1_at	CD900916	-	-	4e-45	At1g14400	UBC1 (UBIQUITIN CARRIER PROTEIN 1)	O.I.	H.G.	S.X.	Please select
0.17	19.8	0.97	Ta.3463.1.S1_x_at	BQ753035	-	-	4e-20	At5g42990	UBC18 (ubiquitin-conjugating enzyme 18)	O.I.	H.G.	S.X.	Please select
0.16	18.2	0.95	Ta.5602.3.S1_a_at	AJ612410	-	-	2e-13	At1g25682	cell cycle control protein-related	O.I.	H.G.	S.X.	Please select
0.16	18.2	0.95	Ta.8189.1.S1_at	BQ161562	-	-	3e-12	At5g51020	CRL (CRUMPLED LEAF)	O.I.	H.G.	S.X.	Please select
0.14	15.8	0.95	Ta.7292.1.S1_at	CK206590	-	-	1e-1	At3g15490	unknown protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
6.4	98.2	GSM314254	tissue type: germinating seed, root - rep1	GSE12508	Transcription patterns during wheat development
4.5	96.9	GSM314255	tissue type: germinating seed, root - rep2	GSE12508	Transcription patterns during wheat development
3.6	95.6	GSM314256	tissue type: germinating seed, root - rep3	GSE12508	Transcription patterns during wheat development
3.1	94.5	GSM298067	Leaf tissue of Paragon at 5 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
2.9	94.0	GSM298074	Crown tissue of Paragon at 5 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
2.6	92.9	GSM298070	Leaf tissue of Paragon at 9 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
2.2	91.0	GSM250900	TcLr34_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
2.1	90.3	GSM314269	tissue type: immature inflorescence - rep1	GSE12508	Transcription patterns during wheat development
2.0	89.7	GSM298072	Crown tissue of Paragon at 3 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
2.0	89.7	GSM343682	Wheat var. Kennedy_control_rep2	GSE13660	Gene expression analysis of the wheat response to infection by Fusarium pseudograminearum

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

Zea_mays

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