Co-expression analysis

Gene ID	Ta.27780.1.S1_x_at
Gene name	beta amylase
Homology with Arabidopsis	Similar to At4g15210: BAM5 (BETA-AMYLASE 5) (HF=2e-2)
Module size	27 genes
NF	0.84
%ile	98.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.87	94.2	1.00	Ta.27780.1.S1_x_at	CD916747	beta amylase	-	2e-2	At4g15210	BAM5 (BETA-AMYLASE 5)	O.I.	H.G.	S.X.	Please select
0.94	98.9	1.00	Ta.24114.14.S1_x_at	BJ241838	Gamma-gliadin /// Gamma-gliadin	-	3e+0	At3g20865	AGP40 (arabinogalactan-protein 40)	O.I.	H.G.	S.X.	Please select
0.93	98.7	1.00	Ta.24963.1.S1_x_at	BJ241536	HMW glutenin	-	1e+0	At5g65790	MYB68 (MYB DOMAIN PROTEIN 68)	O.I.	H.G.	S.X.	Please select
0.91	98.2	1.00	Ta.1257.2.A1_x_at	BJ242255	-	-	7e-1	At1g54830	NF-YC3 (NUCLEAR FACTOR Y, SUBUNIT C3)	O.I.	H.G.	S.X.	Please select
0.89	94.6	1.00	Ta.160.1.S1_x_at	U86028.1	pre-gamma-gliadin B-I	-	7e-1	At5g62575	unknown protein	O.I.	H.G.	S.X.	Please select
0.88	94.4	1.00	Ta.117.1.S1_at	CD914973	serpin	-	7e-1	At1g17650	GLYR2 (GLYOXYLATE REDUCTASE 2)	O.I.	H.G.	S.X.	Please select
0.88	94.4	1.00	Ta.28632.1.S1_x_at	M16060.1	gamma-gliadin	-	3e-2	At1g18750	AGL65 (AGAMOUS-LIKE 65)	O.I.	H.G.	S.X.	Please select
0.86	94.1	1.00	Ta.6175.1.S1_x_at	CD906599	-	-	6e+0	At5g66300	NAC105 (NAC DOMAIN CONTAINING PROTEIN 105)	O.I.	H.G.	S.X.	Please select
0.85	93.8	1.00	Ta.6175.1.S1_at	CD906599	-	-	6e+0	At5g66300	NAC105 (NAC DOMAIN CONTAINING PROTEIN 105)	O.I.	H.G.	S.X.	Please select
0.85	93.8	1.00	Ta.23142.7.S1_x_at	BQ244524	-	-	9e-3	At5g61270	PIF7 (PHYTOCHROME-INTERACTING FACTOR7)	O.I.	H.G.	S.X.	Please select
0.84	93.6	1.00	Ta.1308.1.S1_at	CD918842	beta purothionin precursor	-	1e-1	At4g14550	IAA14 (INDOLE-3-ACETIC ACID INDUCIBLE 14)	O.I.	H.G.	S.X.	Please select
0.82	92.7	1.00	TaAffx.52381.1.S1_at	CA708355	-	-	1e+0	At5g22530	unknown protein	O.I.	H.G.	S.X.	Please select
0.82	92.7	1.00	Ta.2448.1.S1_at	BJ237853	-	-	6e-1	At4g12050	DNA-binding protein-related	O.I.	H.G.	S.X.	Please select
0.81	92.4	1.00	Ta.27780.3.S1_x_at	CD897313	-	-	5e+0	At5g54740	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	O.I.	H.G.	S.X.	Please select
0.81	92.4	1.00	Ta.9799.1.S1_at	BQ805009	-	-	3e-1	At3g60440	-	O.I.	H.G.	S.X.	Please select
0.81	92.4	1.00	Ta.131.1.S1_at	BE430809	low-molecular-weight glutenin storage protein	-	7e-1	At3g46613	RTFL4 (ROTUNDIFOLIA LIKE 4)	O.I.	H.G.	S.X.	Please select
0.81	92.4	1.00	Ta.24114.11.S1_x_at	BJ237788	Alpha/beta-gliadin precursor	-	3e+0	At5g53590	auxin-responsive family protein	O.I.	H.G.	S.X.	Please select
0.81	92.4	1.00	Ta.19.1.S1_at	CD902219	wheat type V thionin	-	2e+0	At5g07600	oleosin / glycine-rich protein	O.I.	H.G.	S.X.	Please select
0.80	92.2	1.00	Ta.24114.18.S1_x_at	BJ239750	-	-	1e+0	At5g10520	RBK1 (Rop Binding protein Kinases 1)	O.I.	H.G.	S.X.	Please select
0.79	91.3	1.00	Ta.27780.2.A1_x_at	BJ243011	-	-	6e+0	At5g15940	binding / catalytic/ oxidoreductase	O.I.	H.G.	S.X.	Please select
0.78	91.1	1.00	Ta.23142.11.S1_x_at	BJ242011	Low molecular weight glutenin subunit	-	5e-1	At4g31580	SRZ-22	O.I.	H.G.	S.X.	Please select
0.78	91.1	1.00	TaAffx.4219.1.S1_at	CA715111	-	-	4e+0	At3g27410	unknown protein	O.I.	H.G.	S.X.	Please select
0.78	91.1	1.00	Ta.115.1.S1_at	CD453742	puroindoline-b	-	6e+0	At5g64950	mitochondrial transcription termination factor-related / mTERF-related	O.I.	H.G.	S.X.	Please select
0.77	90.8	1.00	Ta.23142.8.S1_x_at	BJ235564	low molecular weight glutenin /// low molecular weight glutenin /// low molecular weight glutenin /// low molecular weight glutenin /// low-molecular-weight glutenin storage protein	-	2e-1	At1g74055	unknown protein	O.I.	H.G.	S.X.	Please select
0.77	90.8	1.00	Ta.1308.1.S1_x_at	CD918842	beta purothionin precursor	-	1e-1	At4g14550	IAA14 (INDOLE-3-ACETIC ACID INDUCIBLE 14)	O.I.	H.G.	S.X.	Please select
0.74	89.4	1.00	Ta.23141.1.S1_at	BJ235767	puroindoline-a	-	2e+0	At4g29430	rps15ae (ribosomal protein S15A E)	O.I.	H.G.	S.X.	Please select
0.73	89.1	1.00	Ta.14625.1.S1_x_at	BJ242520	lmw-gs	-	3e+0	At3g20865	AGP40 (arabinogalactan-protein 40)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
50.8	99.9	GSM314289	tissue type: 22 DAP endosperm - rep3	GSE12508	Transcription patterns during wheat development
49.9	99.9	GSM314287	tissue type: 22 DAP endosperm - rep1	GSE12508	Transcription patterns during wheat development
49.4	99.9	GSM314288	tissue type: 22 DAP endosperm - rep2	GSE12508	Transcription patterns during wheat development
14.6	99.5	GSM315203	target strand labeled: Antisense - rep1	GSE12528	Wheat "Chinese Spring" natural antisense transcription survey
3.5	95.4	GSM111233	genotype H8 developing seed at 5 days after anthesis, biological rep2	GSE4935	wheat expression level polymorphism study 39 genotypes 2 biological reps
3.4	95.2	GSM314253	tissue type: germinating seed, coleoptile - rep3	GSE12508	Transcription patterns during wheat development
3.1	94.5	GSM314280	tissue type: anthers, before anthesis - rep3	GSE12508	Transcription patterns during wheat development
3.0	94.3	GSM314279	tissue type: anthers, before anthesis - rep2	GSE12508	Transcription patterns during wheat development
3.0	94.3	GSM314252	tissue type: germinating seed, coleoptile - rep2	GSE12508	Transcription patterns during wheat development
2.8	93.6	GSM314278	tissue type: anthers, before anthesis - rep1	GSE12508	Transcription patterns during wheat development

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

Zea_mays

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