Co-expression analysis

Gene ID	Ta.27726.1.S1_at
Gene name
Homology with Arabidopsis	Similar to At4g37990: ELI3-2 (ELICITOR-ACTIVATED GENE 3-2) (HF=6e-1)
Module size	8 genes
NF	0.69
%ile	92.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.53	74.9	0.86	Ta.27726.1.S1_at	CD880591	-	-	6e-1	At4g37990	ELI3-2 (ELICITOR-ACTIVATED GENE 3-2)	O.I.	H.G.	S.X.	Please select
0.80	92.2	0.89	Ta.1464.2.S1_a_at	CA619486	-	-	7e-2	At1g66500	zinc finger (C2H2-type) family protein	O.I.	H.G.	S.X.	Please select
0.78	91.1	0.89	TaAffx.95812.1.S1_s_at	CA659779	-	-	5e-4	At3g43790	ZIFL2 (ZINC INDUCED FACILITATOR-like 2)	O.I.	H.G.	S.X.	Please select
0.75	89.8	0.91	Ta.9430.1.S1_at	AJ614438	-	-	7e+0	At1g80610	unknown protein	O.I.	H.G.	S.X.	Please select
0.64	83.6	0.86	Ta.10617.1.S1_at	BQ166125	-	-	1e-1	At4g27890	nuclear movement family protein	O.I.	H.G.	S.X.	Please select
0.63	83.1	0.91	Ta.1967.2.A1_x_at	AJ614579	-	-	9e-1	At5g18600	glutaredoxin family protein	O.I.	H.G.	S.X.	Please select
0.56	78.6	0.91	Ta.1967.1.S1_x_at	CK152466	-	-	1e+0	At5g18600	glutaredoxin family protein	O.I.	H.G.	S.X.	Please select
0.50	72.4	0.95	Ta.8097.1.A1_at	BG908758	-	-	4e+0	At3g07590	small nuclear ribonucleoprotein D1, putative / snRNP core protein D1, putative / Sm protein D1, putative	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
16.5	99.6	GSM314255	tissue type: germinating seed, root - rep2	GSE12508	Transcription patterns during wheat development
16.4	99.6	GSM314254	tissue type: germinating seed, root - rep1	GSE12508	Transcription patterns during wheat development
11.1	99.3	GSM298067	Leaf tissue of Paragon at 5 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
7.6	98.7	GSM298069	Leaf tissue of Paragon at 9 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
7.5	98.6	GSM314256	tissue type: germinating seed, root - rep3	GSE12508	Transcription patterns during wheat development
6.4	98.2	GSM298082	Leaf tissue of Solstice at 9 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
6.1	98.1	GSM298057	Leaf tissue of Harnesk at 9 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
6.0	98.0	GSM298078	Leaf tissue of Solstice at 3 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
6.0	98.0	GSM314261	tissue type: seedling, root - rep2	GSE12508	Transcription patterns during wheat development
5.6	97.8	GSM298077	Leaf tissue of Solstice at 3 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

Zea_mays

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