Co-expression analysis

Gene ID Ta.27666.1.A1_s_at
Gene name DNA topoisomerase II inhibitor
Homology with ArabidopsisSimilar to At5g66540: - (HF=2e-2)
Module size 23 genes
NF 0.40
%ile 63.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9498.90.85Ta.27666.1.A1_s_atAF475117.1DNA topoisomerase II inhibitor-2e-2At5g66540-O.I.H.G.S.X.
0.6081.00.89TaAffx.4739.1.S1_atCA733273--1e+0At1g14630unknown proteinO.I.H.G.S.X.
0.5678.60.93Ta.14271.2.A1_atCA726402--2e-26At5g46210CUL4 (CULLIN4)O.I.H.G.S.X.
0.5475.50.89Ta.7383.3.S1_atCA640079--1e+0At2g10940protease inhibitor/seed storage/lipid transfer protein (LTP) family proteinO.I.H.G.S.X.
0.4969.70.89Ta.7560.2.A1_atCA735981--1e+0At1g76440-O.I.H.G.S.X.
0.4869.00.89TaAffx.50330.1.S1_atCA742607--3e-1At3g59090-O.I.H.G.S.X.
0.4767.90.90Ta.24586.3.S1_atCA742505--2e-5At5g63120ethylene-responsive DEAD box RNA helicase, putative (RH30)O.I.H.G.S.X.
0.4666.80.89TaAffx.28018.1.S1_atCA666386--1e+0At3g05280integral membrane Yip1 family proteinO.I.H.G.S.X.
0.4464.50.91Ta.6916.3.A1_atCA734533--4e+0At4g22460protease inhibitor/seed storage/lipid transfer protein (LTP) family proteinO.I.H.G.S.X.
0.4464.50.89Ta.7302.2.S1_atBE428343--1e+0At3g29300unknown proteinO.I.H.G.S.X.
0.3956.10.89Ta.9814.3.S1_atCA738915--3e+0At3g07590small nuclear ribonucleoprotein D1, putative / snRNP core protein D1, putative / Sm protein D1, putativeO.I.H.G.S.X.
0.3956.10.89TaAffx.4644.1.S1_atCA735802--2e+0At2g22230beta-hydroxyacyl-ACP dehydratase, putativeO.I.H.G.S.X.
0.3956.10.89TaAffx.104795.1.S1_atCA744719--1e+0At2g30020protein phosphatase 2C, putative / PP2C, putativeO.I.H.G.S.X.
0.3854.70.91TaAffx.84709.1.S1_atCA630743--3e+0At4g14540NF-YB3 (NUCLEAR FACTOR Y, SUBUNIT B3)O.I.H.G.S.X.
0.3448.10.90TaAffx.122376.2.A1_atBE517420--4e+0At5g48620disease resistance protein (CC-NBS-LRR class), putativeO.I.H.G.S.X.
0.3244.40.91Ta.614.1.S1_atCA687330--9e-2At3g25400-O.I.H.G.S.X.
0.3040.90.90Ta.28655.2.A1_atCA736261--2e-1At5g15690-O.I.H.G.S.X.
0.3040.90.89Ta.13368.3.A1_atCA628267--1e-3At4g34290SWIB complex BAF60b domain-containing proteinO.I.H.G.S.X.
0.2939.20.89TaAffx.4083.2.S1_atCA744655--3e-13At2g14740ATVSR3 (ARABIDOPSIS THALIANA VACULOLAR SORTING RECEPTOR 3)O.I.H.G.S.X.
0.2430.30.93Ta.6166.3.S1_atCA742901--2e-39At2g19830SNF7.2O.I.H.G.S.X.
0.2329.00.90Ta.6692.2.A1_atCA678021--1e-6At4g36960RNA recognition motif (RRM)-containing proteinO.I.H.G.S.X.
0.2329.00.90Ta.2490.3.S1_atCA739185--1e-27At2g44180MAP2A (METHIONINE AMINOPEPTIDASE 2A)O.I.H.G.S.X.
0.1821.00.93Ta.9789.3.S1_atCA735187--4e-40At1g02130ARA-5 (ARABIDOPSIS RAS 5)O.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
7.498.6GSM250898TcLr1_3dpi_inoculated_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
6.098.0GSM250900TcLr34_3dpi_inoculated_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
5.397.6GSM250895Tc_3dpi_mock_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
5.097.4GSM250896Tc_3dpi_inoculated_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
3.996.1GSM250899TcLr34_3dpi_mock_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
3.795.8GSM250897TcLr1_3dpi_mock_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
3.294.8GSM298092Crown tissue of Solstice at 3 weeks post germinationGSE11774Expression data from cold treated wheat cultivarsLink to GEO
2.793.3GSM139928Anther immature pollen rep1GSE6027Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheatLink to GEO
2.592.5GSM139925Anther tetrads rep1GSE6027Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheatLink to GEO
2.291.0GSM139914Anther pre-meiosis rep2GSE6027Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheatLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Vitis_vinifera
Zea_mays



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