Co-expression analysis

Gene ID	Ta.2758.1.S1_at
Gene name
Homology with Arabidopsis	Similar to At5g43360: PHT3 (PHOSPHATE TRANSPORTER 3) (HF=1e-6)
Module size	6 genes
NF	0.89
%ile	99.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.2	0.99	Ta.2758.1.S1_at	AY293828.1	-	-	1e-6	At5g43360	PHT3 (PHOSPHATE TRANSPORTER 3)	O.I.	H.G.	S.X.	Please select
0.91	98.2	0.99	TaAffx.84384.1.S1_at	CA638101	-	-	6e+0	At5g43650	basic helix-loop-helix (bHLH) family protein	O.I.	H.G.	S.X.	Please select
0.91	98.2	0.99	Ta.13950.1.S1_x_at	CK199480	-	-	2e+0	At1g62510	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	O.I.	H.G.	S.X.	Please select
0.83	93.4	0.99	Ta.24626.1.S1_at	CA637891	-	-	7e-1	At1g07210	30S ribosomal protein S18 family	O.I.	H.G.	S.X.	Please select
0.67	86.3	0.99	Ta.18672.1.S1_x_at	CA603610	-	-	3e-1	At1g07610	MT1C	O.I.	H.G.	S.X.	Please select
0.67	86.3	0.99	Ta.5458.1.S1_x_at	CA615319	-	-	1e-1	At2g22980	serine-type carboxypeptidase	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
21.5	99.7	GSM314261	tissue type: seedling, root - rep2	GSE12508	Transcription patterns during wheat development
14.9	99.5	GSM314262	tissue type: seedling, root - rep3	GSE12508	Transcription patterns during wheat development
5.2	97.5	GSM111175	genotype G30 developing seed at 5 days after anthesis, biological rep2	GSE4935	wheat expression level polymorphism study 39 genotypes 2 biological reps
4.7	97.1	GSM314276	tissue type: pistil, before anthesis - rep2	GSE12508	Transcription patterns during wheat development
4.2	96.6	GSM314260	tissue type: seedling, root - rep1	GSE12508	Transcription patterns during wheat development
3.8	96.0	GSM138207	genotype B11 developing seed at 5 days after anthesis, biological rep3	GSE5939	Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location
3.4	95.2	GSM111251	genotype A35 developing seed at 5 days after anthesis, biological rep2	GSE4935	wheat expression level polymorphism study 39 genotypes 2 biological reps
3.3	95.0	GSM111244	genotype G13 developing seed at 5 days after anthesis, biological rep1	GSE4935	wheat expression level polymorphism study 39 genotypes 2 biological reps
2.8	93.6	GSM314275	tissue type: pistil, before anthesis - rep1	GSE12508	Transcription patterns during wheat development
2.8	93.6	GSM138184	genotype C25 developing seed at 5 days after anthesis, biological rep1	GSE5939	Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

Zea_mays

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