Co-expression analysis

Gene ID	Ta.27578.1.S1_at
Gene name
Homology with Arabidopsis	Similar to At3g02090: mitochondrial processing peptidase beta subunit, putative (HF=1e-43)
Module size	6 genes
NF	0.65
%ile	89.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.77	90.8	0.99	Ta.27578.1.S1_at	CN013235	-	-	1e-43	At3g02090	mitochondrial processing peptidase beta subunit, putative	O.I.	H.G.	S.X.	Please select
0.73	89.1	0.99	Ta.6543.1.S1_x_at	CK207938	-	-	4e-78	At5g37510	EMB1467 (embryo defective 1467)	O.I.	H.G.	S.X.	Please select
0.67	86.3	0.99	Ta.28376.1.S1_at	CK167966	-	-	1e-73	At3g27240	cytochrome c1, putative	O.I.	H.G.	S.X.	Please select
0.60	81.0	0.99	Ta.24979.1.S1_at	BT009114.1	-	-	7e-63	At5g03290	isocitrate dehydrogenase, putative / NAD+ isocitrate dehydrogenase, putative	O.I.	H.G.	S.X.	Please select
0.50	72.4	0.99	Ta.12803.1.S1_x_at	CA674406	-	-	3e-5	At2g47380	cytochrome c oxidase subunit Vc family protein / COX5C family protein	O.I.	H.G.	S.X.	Please select
0.35	49.8	0.99	Ta.24916.2.S1_x_at	CK164288	-	-	4e-4	At4g21105	cytochrome-c oxidase/ electron carrier	O.I.	H.G.	S.X.	Please select

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Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
3.5	95.4	GSM111232	genotype H8 developing seed at 5 days after anthesis, biological rep1	GSE4935	wheat expression level polymorphism study 39 genotypes 2 biological reps
3.5	95.4	GSM314289	tissue type: 22 DAP endosperm - rep3	GSE12508	Transcription patterns during wheat development
2.8	93.6	GSM111249	genotype F87 developing seed at 5 days after anthesis, biological rep2	GSE4935	wheat expression level polymorphism study 39 genotypes 2 biological reps
2.8	93.6	GSM111248	genotype F87 developing seed at 5 days after anthesis, biological rep1	GSE4935	wheat expression level polymorphism study 39 genotypes 2 biological reps
2.7	93.3	GSM314287	tissue type: 22 DAP endosperm - rep1	GSE12508	Transcription patterns during wheat development
2.7	93.3	GSM138170	genotype C31 developing seed at 5 days after anthesis, biological rep1	GSE5939	Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location
2.6	92.9	GSM138211	genotype B65 developing seed at 5 days after anthesis, biological rep3	GSE5939	Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location
2.3	91.5	GSM314288	tissue type: 22 DAP endosperm - rep2	GSE12508	Transcription patterns during wheat development
2.2	91.0	GSM138198	genotype C22 developing seed at 5 days after anthesis, biological rep1	GSE5939	Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location
2.2	91.0	GSM138194	genotype J15 developing seed at 5 days after anthesis, biological rep1	GSE5939	Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

Zea_mays

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