Co-expression analysis

Gene ID Ta.27519.1.A1_at
Gene name
Homology with ArabidopsisSimilar to At2g43130: ARA4 (HF=3e-1)
Module size 6 genes
NF 0.06
%ile 16.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9198.20.75Ta.27519.1.A1_atBT009181.1--3e-1At2g43130ARA4O.I.H.G.S.X.
0.056.70.92TaAffx.120295.1.S1_atBJ232977--2e+1At5g42504unknown proteinO.I.H.G.S.X.
0.045.80.87TaAffx.106098.1.S1_atCA725601--4e+0At5g51120PABN1 (POLYADENYLATE-BINDING PROTEIN 1)O.I.H.G.S.X.
0.045.80.93TaAffx.78428.1.S1_atCA732797--1e+0At4g15610integral membrane family proteinO.I.H.G.S.X.
0.045.80.92TaAffx.120617.1.S1_atBJ212756--4e+0At2g39470PPL2 (PsbP-like protein 2)O.I.H.G.S.X.
0.045.80.92TaAffx.50913.1.S1_atCA733503--2e+1At4g09467-O.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
12.299.4GSM250900TcLr34_3dpi_inoculated_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
6.598.3GSM250898TcLr1_3dpi_inoculated_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
4.897.2GSM250897TcLr1_3dpi_mock_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
4.797.1GSM250895Tc_3dpi_mock_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
4.496.8GSM250896Tc_3dpi_inoculated_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
4.196.4GSM298070Leaf tissue of Paragon at 9 weeks post germination, biological rep 2GSE11774Expression data from cold treated wheat cultivarsLink to GEO
3.996.1GSM343688Wheat var. Kennedy_Fp inoculated_rep3GSE13660Gene expression analysis of the wheat response to infection by Fusarium pseudograminearumLink to GEO
3.996.1GSM250899TcLr34_3dpi_mock_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
3.194.5GSM298079Leaf tissue of Solstice at 5 weeks post germination, biological rep 1GSE11774Expression data from cold treated wheat cultivarsLink to GEO
2.994.0GSM138149genotype F29 developing seed at 5 days after anthesis, biological rep3GSE5939Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB locationLink to GEO

Inter-species module comparison

A co-expression module including the grape gene, 1619018_at, orthologous to the query gene, Ta.27519.1.A1_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.6787.91619018_atAt2g43130hypothetical protein LOC100254250-6e-2At5g54850unknown proteinO.I.H.G.S.X.
0.5577.31612328_atAt2g43130hypothetical protein LOC100247770-6e+0At5g07510GRP14O.I.H.G.S.X.
0.5173.21613373_atAt2g43130hypothetical protein LOC100245626-5e-7At3g25500AFH1 (FORMIN HOMOLOGY 1)O.I.H.G.S.X.
0.4969.31609364_atAt2g43130similar to thioredoxin-related protein-8e-6At3g56580zinc finger (C3HC4-type RING finger) family proteinO.I.H.G.S.X.
0.4969.31618126_atAt2g43130hypothetical protein LOC100261549-3e-8At1g76660-O.I.H.G.S.X.
0.4767.71608586_atAt2g43130hypothetical protein LOC100241814-4e-18At4g21960PRXR1O.I.H.G.S.X.
0.4464.11609302_atAt2g43130similar to somatic embryogenesis receptor kinase-7e-14At1g34210SERK2 (SOMATIC EMBRYOGENESIS RECEPTOR-LIKE KINASE 2)O.I.H.G.S.X.
0.4464.11622665_s_atAt2g43130hypothetical protein LOC100246461-5e+0At5g19257unknown proteinO.I.H.G.S.X.
0.4361.51609174_atAt2g43130hypothetical protein LOC100252716-5e-48At3g25500AFH1 (FORMIN HOMOLOGY 1)O.I.H.G.S.X.
0.4361.51611714_atAt2g43130hypothetical protein LOC100264866-2e-61At2g42500PP2A-4O.I.H.G.S.X.
0.3954.91622185_atAt2g43130--3e-2At1g78915bindingO.I.H.G.S.X.
0.3650.71611538_atAt2g43130hypothetical protein LOC100258505-3e-12At2g35630MOR1 (MICROTUBULE ORGANIZATION 1)O.I.H.G.S.X.
0.3446.81608899_atAt2g43130hypothetical protein LOC100266255-8e-8At1g25580ANAC008 (Arabidopsis NAC domain containing protein 8)O.I.H.G.S.X.
0.3446.81613351_atAt2g43130hypothetical protein LOC100252023-2e-1At5g12970C2 domain-containing proteinO.I.H.G.S.X.
0.3243.11619974_atAt2g43130hypothetical protein LOC100250685-1e-3At5g17690TFL2 (TERMINAL FLOWER 2)O.I.H.G.S.X.
0.2327.51614917_atAt2g43130hypothetical protein LOC100267340-4e+0At5g60660PIP2O.I.H.G.S.X.
0.1616.71606720_atAt2g43130hypothetical protein LOC100253703-8e-111At1g20090ROP2 (RHO-RELATED PROTEIN FROM PLANTS 2)O.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Zea_mays



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