Co-expression analysis

Gene ID	Ta.27519.1.A1_at
Gene name
Homology with Arabidopsis	Similar to At2g43130: ARA4 (HF=3e-1)
Module size	6 genes
NF	0.06
%ile	16.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.2	0.75	Ta.27519.1.A1_at	BT009181.1	-	-	3e-1	At2g43130	ARA4	O.I.	H.G.	S.X.	Please select
0.05	6.7	0.92	TaAffx.120295.1.S1_at	BJ232977	-	-	2e+1	At5g42504	unknown protein	O.I.	H.G.	S.X.	Please select
0.04	5.8	0.87	TaAffx.106098.1.S1_at	CA725601	-	-	4e+0	At5g51120	PABN1 (POLYADENYLATE-BINDING PROTEIN 1)	O.I.	H.G.	S.X.	Please select
0.04	5.8	0.93	TaAffx.78428.1.S1_at	CA732797	-	-	1e+0	At4g15610	integral membrane family protein	O.I.	H.G.	S.X.	Please select
0.04	5.8	0.92	TaAffx.120617.1.S1_at	BJ212756	-	-	4e+0	At2g39470	PPL2 (PsbP-like protein 2)	O.I.	H.G.	S.X.	Please select
0.04	5.8	0.92	TaAffx.50913.1.S1_at	CA733503	-	-	2e+1	At4g09467	-	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
12.2	99.4	GSM250900	TcLr34_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
6.5	98.3	GSM250898	TcLr1_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
4.8	97.2	GSM250897	TcLr1_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
4.7	97.1	GSM250895	Tc_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
4.4	96.8	GSM250896	Tc_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
4.1	96.4	GSM298070	Leaf tissue of Paragon at 9 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
3.9	96.1	GSM343688	Wheat var. Kennedy_Fp inoculated_rep3	GSE13660	Gene expression analysis of the wheat response to infection by Fusarium pseudograminearum
3.9	96.1	GSM250899	TcLr34_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
3.1	94.5	GSM298079	Leaf tissue of Solstice at 5 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
2.9	94.0	GSM138149	genotype F29 developing seed at 5 days after anthesis, biological rep3	GSE5939	Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location

Inter-species module comparison

A co-expression module including the poplar gene, PtpAffx.36616.1.S1_at, orthologous to the query gene, Ta.27519.1.A1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.72	92.7	PtpAffx.36616.1.S1_at	At2g43130	hypothetical protein	-	4e-11	At5g57850	aminotransferase class IV family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.57	84.2	PtpAffx.35380.1.S1_a_at	At2g43130	hypothetical protein	-	1e+0	Atmg00900	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.41	67.7	PtpAffx.692.20.S1_s_at	At2g43130	hypothetical protein	-	1e+0	At4g20250	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.39	64.6	Ptp.5801.2.S1_a_at	At2g43130	hypothetical protein	-	2e+0	At1g24440	protein binding / zinc ion binding	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.39	64.6	PtpAffx.692.1.S1_x_at	At2g43130	hypothetical protein	-	1e-1	At5g23950	C2 domain-containing protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.37	62.3	PtpAffx.32386.1.A1_a_at	At2g43130	hypothetical protein	-	8e-3	At1g01780	LIM domain-containing protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.36	61.6	Ptp.5141.1.A1_at	At2g43130	hypothetical protein	-	3e-8	At2g03510	band 7 family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.35	59.7	PtpAffx.115945.1.S1_s_at	At2g43130	hypothetical protein	-	5e-2	At4g00355	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.28	50.5	PtpAffx.13498.1.A1_s_at	At2g43130	hypothetical protein	-	3e+0	At2g39440	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.27	47.1	PtpAffx.32004.2.S1_a_at	At2g43130	hypothetical protein	-	9e-10	At1g15740	leucine-rich repeat family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.27	47.1	Ptp.3673.1.S1_s_at	At2g43130	hypothetical protein	-	6e-1	At4g00355	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.27	47.1	PtpAffx.206220.1.S1_at	At2g43130	hypothetical protein	-	1e-3	At3g15260	protein phosphatase 2C, putative / PP2C, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.26	45.2	PtpAffx.68429.1.S1_at	At2g43130	hypothetical protein	-	1e-8	At3g58710	WRKY69	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.25	43.6	Ptp.2081.1.A1_s_at	At2g43130	hypothetical protein	-	6e-34	At1g77120	ADH1 (ALCOHOL DEHYDROGENASE 1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.19	32.7	PtpAffx.61027.1.S1_at	At2g43130	hypothetical protein	-	1e-17	At2g26230	uricase / urate oxidase / nodulin 35, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.15	25.3	PtpAffx.17949.1.A1_a_at	At2g43130	hypothetical protein	-	3e-17	At5g13190	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Vitis_vinifera

Zea_mays

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