CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Ta.27519.1.A1_at

Gene name
Homology with Arabidopsis Similar to At2g43130: ARA4 (HF=3e-1)

Module size 6 genes

NF 0.06

%ile 16.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 98.2 0.75 Ta.27519.1.A1_at BT009181.1 - - 3e-1 At2g43130 ARA4 O.I. H.G. S.X.
0.05 6.7 0.92 TaAffx.120295.1.S1_at BJ232977 - - 2e+1 At5g42504 unknown protein O.I. H.G. S.X.
0.04 5.8 0.87 TaAffx.106098.1.S1_at CA725601 - - 4e+0 At5g51120 PABN1 (POLYADENYLATE-BINDING PROTEIN 1) O.I. H.G. S.X.
0.04 5.8 0.93 TaAffx.78428.1.S1_at CA732797 - - 1e+0 At4g15610 integral membrane family protein O.I. H.G. S.X.
0.04 5.8 0.92 TaAffx.120617.1.S1_at BJ212756 - - 4e+0 At2g39470 PPL2 (PsbP-like protein 2) O.I. H.G. S.X.
0.04 5.8 0.92 TaAffx.50913.1.S1_at CA733503 - - 2e+1 At4g09467 - O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
12.2 99.4 GSM250900 TcLr34_3dpi_inoculated_rep3 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
6.5 98.3 GSM250898 TcLr1_3dpi_inoculated_rep3 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
4.8 97.2 GSM250897 TcLr1_3dpi_mock_rep3 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
4.7 97.1 GSM250895 Tc_3dpi_mock_rep3 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
4.4 96.8 GSM250896 Tc_3dpi_inoculated_rep3 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
4.1 96.4 GSM298070 Leaf tissue of Paragon at 9 weeks post germination, biological rep 2 GSE11774 Expression data from cold treated wheat cultivars
3.9 96.1 GSM343688 Wheat var. Kennedy_Fp inoculated_rep3 GSE13660 Gene expression analysis of the wheat response to infection by Fusarium pseudograminearum
3.9 96.1 GSM250899 TcLr34_3dpi_mock_rep3 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
3.1 94.5 GSM298079 Leaf tissue of Solstice at 5 weeks post germination, biological rep 1 GSE11774 Expression data from cold treated wheat cultivars
2.9 94.0 GSM138149 genotype F29 developing seed at 5 days after anthesis, biological rep3 GSE5939 Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location

Inter-species module comparison

A co-expression module including the rice gene, Os02g0273100, orthologous to the query gene, Ta.27519.1.A1_at

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.60 79.7 Os02g0273100 At2g43130 - Aminotransferase, class IV family protein 1e-3 At5g57850 aminotransferase class IV family protein O.I. H.G. S.X.
0.57 77.0 Os02g0755600 At2g43130 - UDP-glucuronosyltransferase 1e-3 At1g78270 AtUGT85A4 (UDP-glucosyl transferase 85A4) O.I. H.G. S.X.
0.15 10.3 Os10g0190900 At2g43130 - - 5e-5 At2g34360 antiporter/ drug transporter/ transporter O.I. H.G. S.X.
0.11 6.5 Os01g0966700 At2g43130 - Beta-fructofuranosidase (EC 3.2.1.26) (Fragment) 7e-2 At3g24860 hydroxyproline-rich glycoprotein family protein O.I. H.G. S.X.
0.05 2.5 Os04g0291100 At2g43130 - Glucose/ribitol dehydrogenase family protein 7e-4 At4g23430 short-chain dehydrogenase/reductase (SDR) family protein O.I. H.G. S.X.
0.02 1.0 Os10g0415400 At2g43130 - Hypothetical protein 2e+0 At5g54750 transport protein particle (TRAPP) component Bet3, putative O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Vitis_vinifera
Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage