Co-expression analysis

Gene ID	Ta.27519.1.A1_at
Gene name
Homology with Arabidopsis	Similar to At2g43130: ARA4 (HF=3e-1)
Module size	6 genes
NF	0.06
%ile	16.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.2	0.75	Ta.27519.1.A1_at	BT009181.1	-	-	3e-1	At2g43130	ARA4	O.I.	H.G.	S.X.	Please select
0.05	6.7	0.92	TaAffx.120295.1.S1_at	BJ232977	-	-	2e+1	At5g42504	unknown protein	O.I.	H.G.	S.X.	Please select
0.04	5.8	0.87	TaAffx.106098.1.S1_at	CA725601	-	-	4e+0	At5g51120	PABN1 (POLYADENYLATE-BINDING PROTEIN 1)	O.I.	H.G.	S.X.	Please select
0.04	5.8	0.93	TaAffx.78428.1.S1_at	CA732797	-	-	1e+0	At4g15610	integral membrane family protein	O.I.	H.G.	S.X.	Please select
0.04	5.8	0.92	TaAffx.120617.1.S1_at	BJ212756	-	-	4e+0	At2g39470	PPL2 (PsbP-like protein 2)	O.I.	H.G.	S.X.	Please select
0.04	5.8	0.92	TaAffx.50913.1.S1_at	CA733503	-	-	2e+1	At4g09467	-	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
12.2	99.4	GSM250900	TcLr34_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
6.5	98.3	GSM250898	TcLr1_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
4.8	97.2	GSM250897	TcLr1_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
4.7	97.1	GSM250895	Tc_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
4.4	96.8	GSM250896	Tc_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
4.1	96.4	GSM298070	Leaf tissue of Paragon at 9 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
3.9	96.1	GSM343688	Wheat var. Kennedy_Fp inoculated_rep3	GSE13660	Gene expression analysis of the wheat response to infection by Fusarium pseudograminearum
3.9	96.1	GSM250899	TcLr34_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
3.1	94.5	GSM298079	Leaf tissue of Solstice at 5 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
2.9	94.0	GSM138149	genotype F29 developing seed at 5 days after anthesis, biological rep3	GSE5939	Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location

Inter-species module comparison

A co-expression module including the barley gene, Contig24207_at, orthologous to the query gene, Ta.27519.1.A1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.92	98.4	Contig24207_at	At2g43130	-	-	4e-4	At5g57850	aminotransferase class IV family protein	O.I.	H.G.	S.X.	Please select
0.99	100.0	Contig9959_at	At2g43130	-	-	4e-4	At1g02840	SR1	O.I.	H.G.	S.X.	Please select
0.99	100.0	EBan01_SQ002_F13_at	At2g43130	-	-	3e-1	At3g52230	unknown protein	O.I.	H.G.	S.X.	Please select
0.99	100.0	Contig8820_at	At2g43130	-	-	2e+0	At4g19270	unknown protein	O.I.	H.G.	S.X.	Please select
0.99	100.0	Contig20968_at	At2g43130	-	-	2e-6	At1g15110	phosphatidyl serine synthase family protein	O.I.	H.G.	S.X.	Please select
0.97	99.6	Contig3096_s_at	At2g43130	-	-	3e+0	At3g17170	RFC3 (REGULATOR OF FATTY-ACID COMPOSITION 3)	O.I.	H.G.	S.X.	Please select
0.97	99.6	Contig6434_at	At2g43130	-	-	3e-9	At1g07310	C2 domain-containing protein	O.I.	H.G.	S.X.	Please select
0.97	99.6	Contig10011_at	At2g43130	-	-	1e+0	At2g43290	MSS3 (multicopy suppressors of snf4 deficiency in yeast 3)	O.I.	H.G.	S.X.	Please select
0.96	99.4	Contig25064_at	At2g43130	-	-	1e+0	At1g54215	proline-rich family protein	O.I.	H.G.	S.X.	Please select
0.96	99.4	Contig14328_at	At2g43130	-	-	5e-8	At4g08150	KNAT1 (KNOTTED-LIKE FROM ARABIDOPSIS THALIANA)	O.I.	H.G.	S.X.	Please select
0.96	99.4	Contig13888_at	At2g43130	-	-	3e-2	At5g19940	plastid-lipid associated protein PAP-related / fibrillin-related	O.I.	H.G.	S.X.	Please select
0.96	99.4	HM03M17u_at	At2g43130	-	-	4e-3	At2g36100	integral membrane family protein	O.I.	H.G.	S.X.	Please select
0.95	99.2	Contig11217_at	At2g43130	-	-	6e-4	At3g44750	HDA3 (HISTONE DEACETYLASE 3)	O.I.	H.G.	S.X.	Please select
0.93	98.7	EBan01_SQ005_A15_at	At2g43130	-	-	3e+0	At1g10660	unknown protein	O.I.	H.G.	S.X.	Please select
0.93	98.7	EBan01_SQ005_B22_s_at	At2g43130	-	-	5e+0	At1g30630	coatomer protein epsilon subunit family protein / COPE family protein	O.I.	H.G.	S.X.	Please select
0.93	98.7	Contig20753_at	At2g43130	-	-	5e-7	At2g20900	diacylglycerol kinase, putative	O.I.	H.G.	S.X.	Please select
0.92	98.4	Contig394_at	At2g43130	-	-	1e+0	At5g42850	-	O.I.	H.G.	S.X.	Please select
0.91	98.1	EBan01_SQ003_J01_at	At2g43130	-	-	2e-1	At2g41905	unknown protein	O.I.	H.G.	S.X.	Please select
0.91	98.1	Contig18318_at	At2g43130	-	-	2e+0	At4g23432	unknown protein	O.I.	H.G.	S.X.	Please select
0.91	98.1	Contig8819_s_at	At2g43130	-	-	2e+0	At4g19270	unknown protein	O.I.	H.G.	S.X.	Please select
0.91	98.1	Contig8821_at	At2g43130	-	-	4e-9	At5g45190	cyclin family protein	O.I.	H.G.	S.X.	Please select
0.91	98.1	HVSMEk0006G04r2_at	At2g43130	-	-	2e-1	At4g37790	HAT22	O.I.	H.G.	S.X.	Please select
0.91	98.1	Contig3097_at	At2g43130	-	-	4e+0	At5g46730	glycine-rich protein	O.I.	H.G.	S.X.	Please select
0.90	95.7	EBpi01_SQ002_G19_at	At2g43130	-	-	2e+0	At3g16440	ATMLP-300B (MYROSINASE-BINDING PROTEIN-LIKE PROTEIN-300B)	O.I.	H.G.	S.X.	Please select
0.90	95.7	Contig949_at	At2g43130	-	-	8e-28	At1g29910	CAB3 (CHLOROPHYLL A/B BINDING PROTEIN 3)	O.I.	H.G.	S.X.	Please select
0.90	95.7	Contig17376_at	At2g43130	-	-	2e+0	At5g16090	-	O.I.	H.G.	S.X.	Please select
0.89	95.4	Contig1247_at	At2g43130	-	-	7e-4	At2g39050	hydroxyproline-rich glycoprotein family protein	O.I.	H.G.	S.X.	Please select
0.88	95.2	Contig12689_at	At2g43130	-	-	1e+0	At5g44860	unknown protein	O.I.	H.G.	S.X.	Please select
0.88	95.2	Contig20288_at	At2g43130	-	-	1e+0	At1g22970	unknown protein	O.I.	H.G.	S.X.	Please select
0.87	95.0	Contig19270_at	At2g43130	-	-	2e+0	At1g04970	lipid-binding serum glycoprotein family protein	O.I.	H.G.	S.X.	Please select
0.87	95.0	Contig10604_at	At2g43130	-	-	1e-10	At1g18650	PDCB3 (PLASMODESMATA CALLOSE-BINDING PROTEIN 3)	O.I.	H.G.	S.X.	Please select
0.85	94.5	Contig9898_at	At2g43130	-	-	3e-3	At2g35780	scpl26 (serine carboxypeptidase-like 26)	O.I.	H.G.	S.X.	Please select
0.84	94.3	Contig15860_at	At2g43130	-	-	1e-13	At1g34420	leucine-rich repeat family protein / protein kinase family protein	O.I.	H.G.	S.X.	Please select
0.83	94.0	Contig13707_at	At2g43130	-	-	3e-5	At4g05090	inositol monophosphatase family protein	O.I.	H.G.	S.X.	Please select
0.83	94.0	EBan01_SQ004_O17_at	At2g43130	-	-	4e+0	At5g64470	unknown protein	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

Zea_mays

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