Co-expression analysis

Gene ID Ta.27519.1.A1_at
Gene name
Homology with ArabidopsisSimilar to At2g43130: ARA4 (HF=3e-1)
Module size 6 genes
NF 0.06
%ile 16.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9198.20.75Ta.27519.1.A1_atBT009181.1--3e-1At2g43130ARA4O.I.H.G.S.X.
0.056.70.92TaAffx.120295.1.S1_atBJ232977--2e+1At5g42504unknown proteinO.I.H.G.S.X.
0.045.80.87TaAffx.106098.1.S1_atCA725601--4e+0At5g51120PABN1 (POLYADENYLATE-BINDING PROTEIN 1)O.I.H.G.S.X.
0.045.80.93TaAffx.78428.1.S1_atCA732797--1e+0At4g15610integral membrane family proteinO.I.H.G.S.X.
0.045.80.92TaAffx.120617.1.S1_atBJ212756--4e+0At2g39470PPL2 (PsbP-like protein 2)O.I.H.G.S.X.
0.045.80.92TaAffx.50913.1.S1_atCA733503--2e+1At4g09467-O.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
12.299.4GSM250900TcLr34_3dpi_inoculated_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
6.598.3GSM250898TcLr1_3dpi_inoculated_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
4.897.2GSM250897TcLr1_3dpi_mock_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
4.797.1GSM250895Tc_3dpi_mock_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
4.496.8GSM250896Tc_3dpi_inoculated_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
4.196.4GSM298070Leaf tissue of Paragon at 9 weeks post germination, biological rep 2GSE11774Expression data from cold treated wheat cultivarsLink to GEO
3.996.1GSM343688Wheat var. Kennedy_Fp inoculated_rep3GSE13660Gene expression analysis of the wheat response to infection by Fusarium pseudograminearumLink to GEO
3.996.1GSM250899TcLr34_3dpi_mock_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
3.194.5GSM298079Leaf tissue of Solstice at 5 weeks post germination, biological rep 1GSE11774Expression data from cold treated wheat cultivarsLink to GEO
2.994.0GSM138149genotype F29 developing seed at 5 days after anthesis, biological rep3GSE5939Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB locationLink to GEO

Inter-species module comparison

A co-expression module including the soybean gene, GmaAffx.27808.1.S1_at, orthologous to the query gene, Ta.27519.1.A1_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.9198.6GmaAffx.27808.1.S1_atAt2g43130--2e-1At4g09070-O.I.H.G.S.X.
0.1518.7GmaAffx.65538.1.S1_s_atAt2g43130--2e+0At5g58260-O.I.H.G.S.X.
0.1013.0Gma.1760.3.S1_atAt2g43130--5e-1At2g36295unknown proteinO.I.H.G.S.X.
0.0912.0GmaAffx.65978.2.S1_atAt2g43130--6e-1At1g77746unknown proteinO.I.H.G.S.X.
0.047.0GmaAffx.71902.1.S1_atAt2g43130--3e-1At5g58680armadillo/beta-catenin repeat family proteinO.I.H.G.S.X.
0.035.8GmaAffx.48414.1.S1_atAt2g43130--4e-3At2g47210myb family transcription factorO.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Vitis_vinifera
Zea_mays



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