Co-expression analysis

Gene ID Ta.27515.1.S1_at
Gene name
Homology with ArabidopsisSimilar to At5g19740: peptidase M28 family protein (HF=2e-3)
Module size 6 genes
NF 0.05
%ile 13.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9198.20.81Ta.27515.1.S1_atBT009189.1--2e-3At5g19740peptidase M28 family proteinO.I.H.G.S.X.
0.1112.40.91Ta.17884.1.S1_atCA625288--4e-6At4g29735unknown proteinO.I.H.G.S.X.
0.067.60.91Ta.13009.1.S1_atCA485346--5e+0At5g43620S-locus protein-relatedO.I.H.G.S.X.
0.034.70.91TaAffx.85507.1.S1_s_atCA622147--3e+0At1g78300GRF2 (GENERAL REGULATORY FACTOR 2)O.I.H.G.S.X.
0.023.60.91TaAffx.83715.1.S1_atCA653254--2e+1At5g50740metal ion bindingO.I.H.G.S.X.
0.023.60.93TaAffx.58227.1.S1_atCA621342--1e+0At5g52160protease inhibitor/seed storage/lipid transfer protein (LTP) family proteinO.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
7.998.7GSM298082Leaf tissue of Solstice at 9 weeks post germination, biological rep 2GSE11774Expression data from cold treated wheat cultivarsLink to GEO
7.598.6GSM298081Leaf tissue of Solstice at 9 weeks post germination, biological rep 1GSE11774Expression data from cold treated wheat cultivarsLink to GEO
7.498.6GSM250895Tc_3dpi_mock_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
7.198.5GSM298067Leaf tissue of Paragon at 5 weeks post germination, biological rep 1GSE11774Expression data from cold treated wheat cultivarsLink to GEO
6.398.2GSM250896Tc_3dpi_inoculated_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
6.198.1GSM250899TcLr34_3dpi_mock_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
5.998.0GSM298092Crown tissue of Solstice at 3 weeks post germinationGSE11774Expression data from cold treated wheat cultivarsLink to GEO
5.797.9GSM250900TcLr34_3dpi_inoculated_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
5.197.5GSM298057Leaf tissue of Harnesk at 9 weeks post germination, biological rep 1GSE11774Expression data from cold treated wheat cultivarsLink to GEO
5.097.4GSM298064Crown tissue of Harnesk at 9 weeks post germination, biological rep 2GSE11774Expression data from cold treated wheat cultivarsLink to GEO

Inter-species module comparison

A co-expression module including the maize gene, Zm.10769.1.A1_at, orthologous to the query gene, Ta.27515.1.S1_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.7188.2Zm.10769.1.A1_atAt5g19740glutamate carboxypeptidase 2-2e+0At2g18890protein kinase family proteinO.I.H.G.S.X.
0.7792.1Zm.2603.1.A1_atAt5g19740--5e-2At4g23430short-chain dehydrogenase/reductase (SDR) family proteinO.I.H.G.S.X.
0.6785.8Zm.17354.1.S1_atAt5g19740--4e+0At3g23360protein phosphatase 2C, putative / PP2C, putativeO.I.H.G.S.X.
0.6785.8Zm.3770.1.S1_a_atAt5g19740hypothetical protein LOC100278844-1e-43At5g07290AML4 (ARABIDOPSIS MEI2-LIKE 4)O.I.H.G.S.X.
0.6077.8Zm.5048.7.A1_x_atAt5g19740--3e-11At5g0709040S ribosomal protein S4 (RPS4B)O.I.H.G.S.X.
0.5976.1Zm.11834.1.S1_atAt5g19740hypothetical protein LOC100191186-4e-1At1g06475unknown proteinO.I.H.G.S.X.
0.5571.6Zm.1711.1.A1_atAt5g19740clathrin assembly protein-3e-1At2g34800unknown proteinO.I.H.G.S.X.
0.3844.2Zm.11968.1.A1_atAt5g19740hypothetical protein LOC100216643-3e+0At4g12240zinc finger (C2H2 type) family proteinO.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Vitis_vinifera



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