CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Ta.27515.1.S1_at

Gene name
Homology with Arabidopsis Similar to At5g19740: peptidase M28 family protein (HF=2e-3)

Module size 6 genes

NF 0.05

%ile 13.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 98.2 0.81 Ta.27515.1.S1_at BT009189.1 - - 2e-3 At5g19740 peptidase M28 family protein O.I. H.G. S.X.
0.11 12.4 0.91 Ta.17884.1.S1_at CA625288 - - 4e-6 At4g29735 unknown protein O.I. H.G. S.X.
0.06 7.6 0.91 Ta.13009.1.S1_at CA485346 - - 5e+0 At5g43620 S-locus protein-related O.I. H.G. S.X.
0.03 4.7 0.91 TaAffx.85507.1.S1_s_at CA622147 - - 3e+0 At1g78300 GRF2 (GENERAL REGULATORY FACTOR 2) O.I. H.G. S.X.
0.02 3.6 0.91 TaAffx.83715.1.S1_at CA653254 - - 2e+1 At5g50740 metal ion binding O.I. H.G. S.X.
0.02 3.6 0.93 TaAffx.58227.1.S1_at CA621342 - - 1e+0 At5g52160 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
7.9 98.7 GSM298082 Leaf tissue of Solstice at 9 weeks post germination, biological rep 2 GSE11774 Expression data from cold treated wheat cultivars
7.5 98.6 GSM298081 Leaf tissue of Solstice at 9 weeks post germination, biological rep 1 GSE11774 Expression data from cold treated wheat cultivars
7.4 98.6 GSM250895 Tc_3dpi_mock_rep3 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
7.1 98.5 GSM298067 Leaf tissue of Paragon at 5 weeks post germination, biological rep 1 GSE11774 Expression data from cold treated wheat cultivars
6.3 98.2 GSM250896 Tc_3dpi_inoculated_rep3 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
6.1 98.1 GSM250899 TcLr34_3dpi_mock_rep3 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
5.9 98.0 GSM298092 Crown tissue of Solstice at 3 weeks post germination GSE11774 Expression data from cold treated wheat cultivars
5.7 97.9 GSM250900 TcLr34_3dpi_inoculated_rep3 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
5.1 97.5 GSM298057 Leaf tissue of Harnesk at 9 weeks post germination, biological rep 1 GSE11774 Expression data from cold treated wheat cultivars
5.0 97.4 GSM298064 Crown tissue of Harnesk at 9 weeks post germination, biological rep 2 GSE11774 Expression data from cold treated wheat cultivars

Inter-species module comparison

A co-expression module including the poplar gene, PtpAffx.22300.1.S1_at, orthologous to the query gene, Ta.27515.1.S1_at

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.80 96.0 PtpAffx.22300.1.S1_at At5g19740 hypothetical protein - 5e-7 At5g19740 peptidase M28 family protein O.I. H.G. S.X.
0.83 97.0 Ptp.559.1.S1_at At5g19740 hypothetical protein - 4e+0 At2g35090 unknown protein O.I. H.G. S.X.
0.61 87.0 Ptp.6070.1.S1_at At5g19740 hypothetical protein - 1e+0 At2g48120 PAC (PALE CRESS) O.I. H.G. S.X.
0.40 67.0 Ptp.954.1.S1_at At5g19740 hypothetical protein - 6e-19 At2g21230 bZIP family transcription factor O.I. H.G. S.X.
0.40 67.0 Ptp.4388.1.S1_at At5g19740 hypothetical protein - 4e-44 At4g27960 UBC9 (UBIQUITIN CONJUGATING ENZYME 9) O.I. H.G. S.X.
0.36 61.6 Ptp.8084.1.A1_at At5g19740 cc-nbs-lrr resistance protein - 4e-1 At2g41200 unknown protein O.I. H.G. S.X.
0.18 30.8 PtpAffx.1403.2.S1_at At5g19740 hypothetical protein - 3e-9 At1g23260 MMZ1 (MMS ZWEI HOMOLOGUE 1) O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Vitis_vinifera
Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage