Co-expression analysis

Gene ID	Ta.27428.1.S1_at
Gene name
Homology with Arabidopsis	Similar to At4g23030: MATE efflux protein-related (HF=3e-4)
Module size	6 genes
NF	0.07
%ile	17.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.67	86.3	0.90	Ta.27428.1.S1_at	CD866447	-	-	3e-4	At4g23030	MATE efflux protein-related	O.I.	H.G.	S.X.	Please select
0.09	10.4	0.92	Ta.24988.2.S1_x_at	CA733207	-	-	4e+0	At5g54760	eukaryotic translation initiation factor SUI1, putative	O.I.	H.G.	S.X.	Please select
0.07	8.6	0.93	TaAffx.113185.2.S1_at	CA617420	-	-	4e+0	At3g54940	-	O.I.	H.G.	S.X.	Please select
0.07	8.6	0.92	TaAffx.49705.1.S1_at	CD865470	-	-	1e+1	At5g15581	unknown protein	O.I.	H.G.	S.X.	Please select
0.04	5.8	0.93	TaAffx.5390.1.S1_at	CA712421	-	-	2e+1	At1g73380	unknown protein	O.I.	H.G.	S.X.	Please select
0.03	4.7	0.93	TaAffx.6656.1.S1_at	CA680773	-	-	1e+0	At5g41050	unknown protein	O.I.	H.G.	S.X.	Please select

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Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
28.4	99.8	GSM111233	genotype H8 developing seed at 5 days after anthesis, biological rep2	GSE4935	wheat expression level polymorphism study 39 genotypes 2 biological reps
14.9	99.5	GSM343688	Wheat var. Kennedy_Fp inoculated_rep3	GSE13660	Gene expression analysis of the wheat response to infection by Fusarium pseudograminearum
13.6	99.5	GSM314276	tissue type: pistil, before anthesis - rep2	GSE12508	Transcription patterns during wheat development
13.5	99.5	GSM314275	tissue type: pistil, before anthesis - rep1	GSE12508	Transcription patterns during wheat development
12.6	99.4	GSM314277	tissue type: pistil, before anthesis - rep3	GSE12508	Transcription patterns during wheat development
12.4	99.4	GSM343682	Wheat var. Kennedy_control_rep2	GSE13660	Gene expression analysis of the wheat response to infection by Fusarium pseudograminearum
10.2	99.2	GSM343685	Wheat var. Kennedy_control_rep3	GSE13660	Gene expression analysis of the wheat response to infection by Fusarium pseudograminearum
8.8	98.9	GSM343687	Wheat var. Kennedy_Fp inoculated_rep2	GSE13660	Gene expression analysis of the wheat response to infection by Fusarium pseudograminearum
7.7	98.7	GSM343678	Wheat var. Kennedy_control_rep1	GSE13660	Gene expression analysis of the wheat response to infection by Fusarium pseudograminearum
7.4	98.6	GSM324487	Si- B+ rep1	GSE12936	Transcriptomic analysis of the effect of silicon on wheat plants infected or uninfected with powdery mildew

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

Zea_mays

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