Co-expression analysis

Gene ID	Ta.2739.2.A1_x_at
Gene name
Homology with Arabidopsis	Similar to At3g16780: 60S ribosomal protein L19 (RPL19B) (HF=1e-50)
Module size	18 genes
NF	0.65
%ile	89.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.81	92.4	0.99	Ta.2739.2.A1_x_at	CK165923	-	-	1e-50	At3g16780	60S ribosomal protein L19 (RPL19B)	O.I.	H.G.	S.X.	Please select
0.91	98.2	0.99	Ta.28703.1.S1_at	BJ229420	-	-	1e-26	At4g31700	RPS6 (RIBOSOMAL PROTEIN S6)	O.I.	H.G.	S.X.	Please select
0.77	90.8	0.99	Ta.28434.1.S1_x_at	BQ295290	-	-	2e-18	At3g04920	40S ribosomal protein S24 (RPS24A)	O.I.	H.G.	S.X.	Please select
0.77	90.8	0.99	Ta.3277.2.S1_x_at	BJ231305	-	-	4e-48	At2g37270	ATRPS5B (RIBOSOMAL PROTEIN 5B)	O.I.	H.G.	S.X.	Please select
0.72	88.3	0.99	Ta.1924.2.S1_x_at	BJ219523	-	-	4e-35	At5g07090	40S ribosomal protein S4 (RPS4B)	O.I.	H.G.	S.X.	Please select
0.71	88.0	0.99	Ta.1924.1.S1_x_at	CK208163	-	-	2e-35	At5g58420	40S ribosomal protein S4 (RPS4D)	O.I.	H.G.	S.X.	Please select
0.70	87.2	0.99	Ta.22683.2.S1_at	BJ218386	-	-	1e-32	At4g00100	ATRPS13A (ARABIDOPSIS THALIANA RIBOSOMAL PROTEIN S13A)	O.I.	H.G.	S.X.	Please select
0.70	87.2	0.99	Ta.28388.1.S1_at	CK162361	-	-	3e-82	At1g07770	RPS15A (ribosomal protein s15a)	O.I.	H.G.	S.X.	Please select
0.67	86.3	0.99	Ta.2739.4.S1_x_at	BJ321613	Ribosomal protein L19	-	3e-45	At3g16780	60S ribosomal protein L19 (RPL19B)	O.I.	H.G.	S.X.	Please select
0.65	83.9	0.99	Ta.23429.1.S1_at	CK203896	Ribosomal protein S7	-	5e-5	At1g48830	40S ribosomal protein S7 (RPS7A)	O.I.	H.G.	S.X.	Please select
0.61	82.0	0.99	Ta.13683.1.S1_at	CD893419	-	-	7e-25	At2g19740	60S ribosomal protein L31 (RPL31A)	O.I.	H.G.	S.X.	Please select
0.57	79.2	0.99	Ta.1289.1.S1_s_at	BJ310874	-	-	2e-40	At4g30800	40S ribosomal protein S11 (RPS11B)	O.I.	H.G.	S.X.	Please select
0.56	78.6	0.99	Ta.3277.1.S1_a_at	BU100394	-	-	2e-32	At3g11940	ATRPS5A (RIBOSOMAL PROTEIN 5A)	O.I.	H.G.	S.X.	Please select
0.56	78.6	0.99	Ta.23479.1.S1_a_at	CK160622	-	-	1e-47	At5g09510	40S ribosomal protein S15 (RPS15D)	O.I.	H.G.	S.X.	Please select
0.55	76.8	0.99	Ta.27377.2.S1_x_at	BJ320612	-	-	2e-64	At3g52590	UBQ1 (UBIQUITIN EXTENSION PROTEIN 1)	O.I.	H.G.	S.X.	Please select
0.53	74.9	0.99	Ta.28713.1.S1_x_at	CD927880	-	-	7e-9	At3g22230	60S ribosomal protein L27 (RPL27B)	O.I.	H.G.	S.X.	Please select
0.50	72.4	0.99	Ta.27765.2.S1_x_at	BJ228881	Ribosomal protein L39	-	6e-15	At4g31985	60S ribosomal protein L39 (RPL39C)	O.I.	H.G.	S.X.	Please select
0.44	64.5	0.99	Ta.1335.2.S1_x_at	CD454702	-	-	2e-86	At5g02960	40S ribosomal protein S23 (RPS23B)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
10.4	99.2	GSM314289	tissue type: 22 DAP endosperm - rep3	GSE12508	Transcription patterns during wheat development
6.4	98.2	GSM314288	tissue type: 22 DAP endosperm - rep2	GSE12508	Transcription patterns during wheat development
4.4	96.8	GSM250906	TcLr34_7dpi_inoculated_rep1	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
4.3	96.7	GSM314287	tissue type: 22 DAP endosperm - rep1	GSE12508	Transcription patterns during wheat development
4.0	96.3	GSM315203	target strand labeled: Antisense - rep1	GSE12528	Wheat "Chinese Spring" natural antisense transcription survey
3.5	95.4	GSM250912	TcLr34_7dpi_inoculated_rep2	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
3.5	95.4	GSM250900	TcLr34_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
3.0	94.3	GSM250898	TcLr1_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
2.8	93.6	GSM250918	TcLr34_7dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
2.4	92.0	GSM139918	Anther leptotene-pachytene rep3	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

Zea_mays

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