Co-expression analysis

Gene ID	Ta.27319.1.S1_at
Gene name
Homology with Arabidopsis	Similar to At3g01090: AKIN10 (Arabidopsis SNF1 kinase homolog 10) (HF=2e-57)
Module size	19 genes
NF	0.26
%ile	42.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.88	94.4	0.96	Ta.27319.1.S1_at	BT009349.1	-	-	2e-57	At3g01090	AKIN10 (Arabidopsis SNF1 kinase homolog 10)	O.I.	H.G.	S.X.	Please select
0.38	54.7	0.97	Ta.7295.1.S1_at	CK206196	-	-	3e-16	At4g36940	NAPRT1 (NICOTINATE PHOSPHORIBOSYLTRANSFERASE 1)	O.I.	H.G.	S.X.	Please select
0.35	49.8	0.97	Ta.9326.1.S1_x_at	CA705658	-	-	4e-2	At3g47300	SELT (SELT-LIKE PROTEIN PRECURSOR)	O.I.	H.G.	S.X.	Please select
0.33	46.9	0.97	Ta.9326.1.S1_a_at	CA705658	-	-	4e-2	At3g47300	SELT (SELT-LIKE PROTEIN PRECURSOR)	O.I.	H.G.	S.X.	Please select
0.32	44.4	0.99	Ta.1058.2.S1_x_at	BJ254771	S-adenosylmethionine decarboxylase precursor	-	3e-5	At3g02470	SAMDC (S-ADENOSYLMETHIONINE DECARBOXYLASE)	O.I.	H.G.	S.X.	Please select
0.31	42.7	0.96	Ta.1601.2.S1_a_at	CA706318	-	-	9e-7	At1g43710	emb1075 (embryo defective 1075)	O.I.	H.G.	S.X.	Please select
0.29	39.2	0.98	Ta.1058.1.S1_x_at	CK168726	S-adenosylmethionine decarboxylase precursor	-	5e-12	At3g02468	CPuORF9 (Conserved peptide upstream open reading frame 9)	O.I.	H.G.	S.X.	Please select
0.27	35.6	0.96	Ta.1601.1.S1_at	CK153610	-	-	1e-34	At1g43710	emb1075 (embryo defective 1075)	O.I.	H.G.	S.X.	Please select
0.27	35.6	0.99	Ta.1058.2.S1_at	BJ254771	S-adenosylmethionine decarboxylase precursor	-	3e-5	At3g02470	SAMDC (S-ADENOSYLMETHIONINE DECARBOXYLASE)	O.I.	H.G.	S.X.	Please select
0.26	33.6	0.98	Ta.1058.3.S1_x_at	CN013117	S-adenosylmethionine decarboxylase precursor	-	8e-5	At3g02470	SAMDC (S-ADENOSYLMETHIONINE DECARBOXYLASE)	O.I.	H.G.	S.X.	Please select
0.26	33.6	0.96	Ta.9591.2.S1_x_at	CA688256	-	-	8e-1	At3g10300	calcium-binding EF hand family protein	O.I.	H.G.	S.X.	Please select
0.25	32.1	0.96	Ta.1342.2.S1_x_at	BJ306875	-	-	4e-1	At2g23090	unknown protein	O.I.	H.G.	S.X.	Please select
0.22	27.1	0.96	Ta.1810.1.S1_at	BE405207	-	-	2e+0	At3g01020	ISU2 (ISCU-LIKE 2)	O.I.	H.G.	S.X.	Please select
0.21	25.5	0.97	Ta.2502.1.S1_a_at	BJ241868	HSP80-2	-	0	At5g56000	heat shock protein 81-4 (HSP81-4)	O.I.	H.G.	S.X.	Please select
0.20	24.0	0.96	Ta.30793.1.S1_x_at	CK212652	-	-	1e-4	At5g46030	unknown protein	O.I.	H.G.	S.X.	Please select
0.20	24.0	0.97	Ta.14353.1.S1_at	BU100478	-	-	5e-4	At5g52200	unknown protein	O.I.	H.G.	S.X.	Please select
0.19	22.4	0.97	Ta.13231.1.S1_at	BJ286554	vacuolar proton ATPase subunit E	-	7e-35	At4g11150	TUF (VACUOLAR ATP SYNTHASE SUBUNIT E1)	O.I.	H.G.	S.X.	Please select
0.19	22.4	0.96	Ta.13425.1.S1_at	CK211578	-	-	2e-29	At4g08790	nitrilase, putative	O.I.	H.G.	S.X.	Please select
0.13	14.6	0.97	Ta.13236.1.S1_at	BM136267	SUSIBA2-like protein	-	2e-18	At4g26640	WRKY20	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
15.0	99.6	GSM315203	target strand labeled: Antisense - rep1	GSE12528	Wheat "Chinese Spring" natural antisense transcription survey
4.7	97.1	GSM314273	tissue type: floral bracts, before anthesis - rep2	GSE12508	Transcription patterns during wheat development
4.1	96.4	GSM250895	Tc_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
3.8	96.0	GSM314274	tissue type: floral bracts, before anthesis - rep3	GSE12508	Transcription patterns during wheat development
2.6	92.9	GSM250898	TcLr1_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
2.1	90.3	GSM314269	tissue type: immature inflorescence - rep1	GSE12508	Transcription patterns during wheat development
2.0	89.7	GSM298076	Crown tissue of Paragon at 9 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
2.0	89.7	GSM139914	Anther pre-meiosis rep2	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
2.0	89.7	GSM139928	Anther immature pollen rep1	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
2.0	89.7	GSM298075	Crown tissue of Paragon at 9 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

Zea_mays

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