Co-expression analysis

Gene ID	Ta.27161.1.S1_at
Gene name
Homology with Arabidopsis	Similar to At3g59380: FTA (FARNESYLTRANSFERASE A) (HF=5e-4)
Module size	6 genes
NF	0.13
%ile	25.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.2	0.70	Ta.27161.1.S1_at	CK161726	-	-	5e-4	At3g59380	FTA (FARNESYLTRANSFERASE A)	O.I.	H.G.	S.X.	Please select
0.36	51.9	0.92	TaAffx.112085.1.S1_at	CA627212	-	-	4e+0	At4g15710	unknown protein	O.I.	H.G.	S.X.	Please select
0.22	27.1	0.92	TaAffx.55497.1.S1_at	CA665286	-	-	3e-1	At5g62610	basic helix-loop-helix (bHLH) family protein	O.I.	H.G.	S.X.	Please select
0.08	9.4	0.89	RPTR-Ta-L36849-1_at	RPTR-Ta-L36849-1	-	-			-	O.I.	H.G.	S.X.	Please select
0.07	8.6	0.85	TaAffx.110735.1.S1_at	CA655118	-	-	3e-1	At5g51210	OLEO3 (OLEOSIN3)	O.I.	H.G.	S.X.	Please select
0.05	6.7	0.91	TaAffx.110731.1.S1_at	CA655161	-	-	2e+1	At5g55570	unknown protein	O.I.	H.G.	S.X.	Please select

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Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
22.6	99.8	GSM143522	Thatcher_Lr34 (susceptible), mock inoculated basal leaf, replication 2	GSE6227	Expression data from rust or mock inoculated, fully expanded flag leaf halves
9.4	99.1	GSM250897	TcLr1_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
7.2	98.5	GSM250900	TcLr34_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
5.9	98.0	GSM298070	Leaf tissue of Paragon at 9 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
5.7	97.9	GSM250895	Tc_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
5.7	97.9	GSM298067	Leaf tissue of Paragon at 5 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
5.6	97.8	GSM250898	TcLr1_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
5.3	97.6	GSM250899	TcLr34_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
5.2	97.5	GSM143525	Thatcher_Lr34 (susceptible), mock inoculated distal leaf, replication 2	GSE6227	Expression data from rust or mock inoculated, fully expanded flag leaf halves
4.3	96.7	GSM315203	target strand labeled: Antisense - rep1	GSE12528	Wheat "Chinese Spring" natural antisense transcription survey

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

Zea_mays

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