Co-expression analysis

Gene ID	Ta.27101.7.S1_x_at
Gene name
Homology with Arabidopsis	Similar to At1g09200: histone H3 (HF=9e-45)
Module size	38 genes
NF	0.67
%ile	91.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.2	0.95	Ta.27101.7.S1_x_at	BJ221566	-	-	9e-45	At1g09200	histone H3	O.I.	H.G.	S.X.	Please select
0.81	92.4	0.98	Ta.7378.22.S1_x_at	BJ214626	Protein H2B-6 /// Protein H2B-8 /// Histone H2B	-	9e-21	At1g07790	HTB1	O.I.	H.G.	S.X.	Please select
0.79	91.3	0.97	Ta.10329.43.S1_x_at	BJ277068	-	-	9e-20	At5g59970	histone H4	O.I.	H.G.	S.X.	Please select
0.79	91.3	0.97	Ta.7378.28.S1_x_at	BJ229643	Protein H2B-8	-	3e-14	At1g07790	HTB1	O.I.	H.G.	S.X.	Please select
0.78	91.1	0.98	Ta.7378.8.S1_x_at	CK216925	Protein H2B-8	-	1e-16	At1g07790	HTB1	O.I.	H.G.	S.X.	Please select
0.78	91.1	0.98	Ta.27657.11.S1_x_at	BJ318011	-	-	7e-12	At1g08880	H2AXA	O.I.	H.G.	S.X.	Please select
0.78	91.1	0.97	Ta.7378.22.S1_at	BJ214626	Protein H2B-6 /// Protein H2B-8 /// Histone H2B	-	9e-21	At1g07790	HTB1	O.I.	H.G.	S.X.	Please select
0.77	90.8	0.98	Ta.7378.25.S1_at	BJ221397	Protein H2B-8	-	1e-22	At1g07790	HTB1	O.I.	H.G.	S.X.	Please select
0.74	89.4	0.97	Ta.16950.1.S1_at	CA615793	-	-	3e+0	At5g23280	TCP family transcription factor, putative	O.I.	H.G.	S.X.	Please select
0.73	89.1	0.98	Ta.7378.30.S1_x_at	BJ219629	Protein H2B-6	-	3e-20	At1g07790	HTB1	O.I.	H.G.	S.X.	Please select
0.72	88.3	0.97	Ta.7378.14.S1_at	BJ307788	Protein H2B-8	-	9e-18	At1g07790	HTB1	O.I.	H.G.	S.X.	Please select
0.71	88.0	0.98	Ta.10329.32.S1_at	BJ320326	-	-	2e-18	At5g59970	histone H4	O.I.	H.G.	S.X.	Please select
0.71	88.0	0.96	TaAffx.113263.3.S1_at	BF199737	-	-	3e-16	At1g09200	histone H3	O.I.	H.G.	S.X.	Please select
0.71	88.0	0.97	Ta.28486.1.A1_at	CA719316	-	-	2e-5	At1g08880	H2AXA	O.I.	H.G.	S.X.	Please select
0.70	87.2	0.98	Ta.7378.5.A1_at	BJ225202	-	-	1e-3	At3g09480	histone H2B, putative	O.I.	H.G.	S.X.	Please select
0.70	87.2	0.98	Ta.10329.15.S1_at	CA728847	-	-	2e-21	At5g59690	histone H4	O.I.	H.G.	S.X.	Please select
0.70	87.2	0.98	Ta.7378.34.S1_at	BJ305771	-	-	5e-13	At1g07790	HTB1	O.I.	H.G.	S.X.	Please select
0.70	87.2	0.96	Ta.9286.1.S1_at	CD454567	-	-	3e-22	At3g19240	-	O.I.	H.G.	S.X.	Please select
0.70	87.2	0.98	Ta.28691.1.A1_x_at	BQ294672	-	-	4e+0	At5g59970	histone H4	O.I.	H.G.	S.X.	Please select
0.69	86.9	0.97	TaAffx.32695.1.S1_s_at	CA501172	-	-	9e-1	At4g36780	transcription regulator	O.I.	H.G.	S.X.	Please select
0.68	86.5	0.98	Ta.7378.8.S1_at	CK216925	-	-	1e-16	At1g07790	HTB1	O.I.	H.G.	S.X.	Please select
0.66	84.1	0.98	Ta.7378.3.S1_at	BJ319734	Protein H2B-6	-	7e-18	At5g22880	HTB2	O.I.	H.G.	S.X.	Please select
0.65	83.9	0.97	Ta.10329.40.S1_x_at	BJ308966	-	-	2e-21	At5g59690	histone H4	O.I.	H.G.	S.X.	Please select
0.63	83.1	0.96	Ta.7378.29.S1_at	BJ231541	-	-	4e-13	At1g07790	HTB1	O.I.	H.G.	S.X.	Please select
0.63	83.1	0.97	Ta.27192.1.S1_at	D38088.1	protein H2A	-	3e-9	At1g08880	H2AXA	O.I.	H.G.	S.X.	Please select
0.63	83.1	0.98	Ta.10329.29.S1_x_at	BJ300857	-	-	1e-19	At5g59690	histone H4	O.I.	H.G.	S.X.	Please select
0.61	82.0	0.97	Ta.7378.1.S1_x_at	D37943.1	protein H2B-8	-	3e-20	At1g07790	HTB1	O.I.	H.G.	S.X.	Please select
0.61	82.0	0.98	Ta.27101.3.S1_at	CK209895	-	-	4e-38	At1g09200	histone H3	O.I.	H.G.	S.X.	Please select
0.61	82.0	0.98	Ta.27101.2.S1_at	CD868502	-	-	5e-19	At4g40040	histone H3.2	O.I.	H.G.	S.X.	Please select
0.60	81.0	0.97	Ta.11282.1.S1_a_at	CA616162	-	-	1e-2	At3g11820	SYP121 (SYNTAXIN OF PLANTS 121)	O.I.	H.G.	S.X.	Please select
0.60	81.0	0.98	Ta.27101.3.S1_x_at	CK209895	-	-	4e-38	At1g09200	histone H3	O.I.	H.G.	S.X.	Please select
0.59	79.8	0.98	Ta.7378.35.S1_x_at	CK217139	-	-	2e-18	At1g07790	HTB1	O.I.	H.G.	S.X.	Please select
0.57	79.2	0.98	Ta.27657.7.S1_x_at	BJ306445	Protein H2A	-	1e-7	At4g27230	HTA2 (histone H2A)	O.I.	H.G.	S.X.	Please select
0.52	73.7	0.97	Ta.6911.1.S1_at	CA702838	-	-	1e-11	At1g76540	CDKB2	O.I.	H.G.	S.X.	Please select
0.52	73.7	0.98	Ta.9965.1.S1_at	CA654027	-	-	6e-1	At5g44565	unknown protein	O.I.	H.G.	S.X.	Please select
0.52	73.7	0.98	Ta.7378.16.S1_x_at	CD906311	Protein H2B-6	-	1e-23	At1g07790	HTB1	O.I.	H.G.	S.X.	Please select
0.42	60.9	0.97	Ta.7378.12.S1_at	BQ295477	-	-	5e-26	At1g07790	HTB1	O.I.	H.G.	S.X.	Please select
0.41	59.6	0.97	Ta.7378.20.S1_x_at	BJ308740	-	-	9e-15	At1g07790	HTB1	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
4.2	96.6	GSM314271	tissue type: immature inflorescence - rep3	GSE12508	Transcription patterns during wheat development
4.2	96.6	GSM314269	tissue type: immature inflorescence - rep1	GSE12508	Transcription patterns during wheat development
4.0	96.3	GSM314270	tissue type: immature inflorescence - rep2	GSE12508	Transcription patterns during wheat development
3.9	96.1	GSM298092	Crown tissue of Solstice at 3 weeks post germination	GSE11774	Expression data from cold treated wheat cultivars
3.6	95.6	GSM298093	Crown tissue of Solstice at 5 weeks post germination	GSE11774	Expression data from cold treated wheat cultivars
3.5	95.4	GSM314287	tissue type: 22 DAP endosperm - rep1	GSE12508	Transcription patterns during wheat development
3.2	94.8	GSM314288	tissue type: 22 DAP endosperm - rep2	GSE12508	Transcription patterns during wheat development
3.1	94.5	GSM298060	Crown tissue of Harnesk at 3 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
3.1	94.5	GSM298061	Crown tissue of Harnesk at 5 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
3.1	94.5	GSM314289	tissue type: 22 DAP endosperm - rep3	GSE12508	Transcription patterns during wheat development

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

Zea_mays

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