Co-expression analysis

Gene ID Ta.26868.1.A1_at
Gene name
Homology with ArabidopsisSimilar to At1g09240: NAS3 (NICOTIANAMINE SYNTHASE 3) (HF=8e-2)
Module size 6 genes
NF 0.08
%ile 19.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9198.20.83Ta.26868.1.A1_atCD491516--8e-2At1g09240NAS3 (NICOTIANAMINE SYNTHASE 3)O.I.H.G.S.X.
0.4464.50.94TaAffx.52323.1.S1_atCA709364--4e+0At5g27238-O.I.H.G.S.X.
0.1415.80.94TaAffx.92350.1.S1_atBJ269587--1e+0At5g47306unknown proteinO.I.H.G.S.X.
0.1415.80.94Ta.16180.1.A1_atBJ322793--1e+0At1g034102A6O.I.H.G.S.X.
0.045.80.95Ta.3911.2.S1_s_atCA604151--4e+0At2g44290protease inhibitor/seed storage/lipid transfer protein (LTP) family protein (YLS3)O.I.H.G.S.X.
0.023.60.94TaAffx.3664.1.S1_atCD876496--2e+0At2g47710universal stress protein (USP) family proteinO.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
5.597.8GSM298092Crown tissue of Solstice at 3 weeks post germinationGSE11774Expression data from cold treated wheat cultivarsLink to GEO
3.695.6GSM298064Crown tissue of Harnesk at 9 weeks post germination, biological rep 2GSE11774Expression data from cold treated wheat cultivarsLink to GEO
3.595.4GSM298076Crown tissue of Paragon at 9 weeks post germination, biological rep 2GSE11774Expression data from cold treated wheat cultivarsLink to GEO
3.495.2GSM250898TcLr1_3dpi_inoculated_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
3.294.8GSM250899TcLr34_3dpi_mock_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
2.994.0GSM314269tissue type: immature inflorescence - rep1GSE12508Transcription patterns during wheat developmentLink to GEO
2.994.0GSM250900TcLr34_3dpi_inoculated_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
2.994.0GSM298094Crown tissue of Solstice at 9 weeks post germinationGSE11774Expression data from cold treated wheat cultivarsLink to GEO
2.994.0GSM298063Crown tissue of Harnesk at 9 weeks post germination, biological rep 1GSE11774Expression data from cold treated wheat cultivarsLink to GEO
2.994.0GSM298070Leaf tissue of Paragon at 9 weeks post germination, biological rep 2GSE11774Expression data from cold treated wheat cultivarsLink to GEO

Inter-species module comparison

A co-expression module including the rice gene, Os08g0504600, orthologous to the query gene, Ta.26868.1.A1_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.6382.7Os08g0504600At1g09240-RNA-binding region RNP-1 (RNA recognition motif)domain containing protein2e-6At3g12640RNA binding / nucleic acid binding / nucleotide bindingO.I.H.G.S.X.
0.5978.0Os04g0643000At1g09240-Cullin family protein1e-19At1g26830ATCUL3 (ARABIDOPSIS THALIANA CULLIN 3)O.I.H.G.S.X.
0.4253.9Os09g0252800At1g09240-HECT domain containing protein1e-58At1g70320UPL2 (UBIQUITIN-PROTEIN LIGASE 2)O.I.H.G.S.X.
0.4051.1Os03g0344700At1g09240--2e-43At1g02890AAA-type ATPase family proteinO.I.H.G.S.X.
0.3032.7Os03g0747200At1g09240-Conserved hypothetical protein6e-2At1g20050HYD1 (HYDRA1)O.I.H.G.S.X.
0.2422.4Os03g0811700At1g09240-Pre-mRNA branch site p14-like protein6e-31At5g12190RNA recognition motif (RRM)-containing proteinO.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Vitis_vinifera
Zea_mays



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