Co-expression analysis

Gene ID Ta.26868.1.A1_at
Gene name
Homology with ArabidopsisSimilar to At1g09240: NAS3 (NICOTIANAMINE SYNTHASE 3) (HF=8e-2)
Module size 6 genes
NF 0.08
%ile 19.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9198.20.83Ta.26868.1.A1_atCD491516--8e-2At1g09240NAS3 (NICOTIANAMINE SYNTHASE 3)O.I.H.G.S.X.
0.4464.50.94TaAffx.52323.1.S1_atCA709364--4e+0At5g27238-O.I.H.G.S.X.
0.1415.80.94TaAffx.92350.1.S1_atBJ269587--1e+0At5g47306unknown proteinO.I.H.G.S.X.
0.1415.80.94Ta.16180.1.A1_atBJ322793--1e+0At1g034102A6O.I.H.G.S.X.
0.045.80.95Ta.3911.2.S1_s_atCA604151--4e+0At2g44290protease inhibitor/seed storage/lipid transfer protein (LTP) family protein (YLS3)O.I.H.G.S.X.
0.023.60.94TaAffx.3664.1.S1_atCD876496--2e+0At2g47710universal stress protein (USP) family proteinO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
5.597.8GSM298092Crown tissue of Solstice at 3 weeks post germinationGSE11774Expression data from cold treated wheat cultivarsLink to GEO
3.695.6GSM298064Crown tissue of Harnesk at 9 weeks post germination, biological rep 2GSE11774Expression data from cold treated wheat cultivarsLink to GEO
3.595.4GSM298076Crown tissue of Paragon at 9 weeks post germination, biological rep 2GSE11774Expression data from cold treated wheat cultivarsLink to GEO
3.495.2GSM250898TcLr1_3dpi_inoculated_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
3.294.8GSM250899TcLr34_3dpi_mock_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
2.994.0GSM314269tissue type: immature inflorescence - rep1GSE12508Transcription patterns during wheat developmentLink to GEO
2.994.0GSM250900TcLr34_3dpi_inoculated_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
2.994.0GSM298094Crown tissue of Solstice at 9 weeks post germinationGSE11774Expression data from cold treated wheat cultivarsLink to GEO
2.994.0GSM298063Crown tissue of Harnesk at 9 weeks post germination, biological rep 1GSE11774Expression data from cold treated wheat cultivarsLink to GEO
2.994.0GSM298070Leaf tissue of Paragon at 9 weeks post germination, biological rep 2GSE11774Expression data from cold treated wheat cultivarsLink to GEO

Inter-species module comparison

A co-expression module including the soybean gene, GmaAffx.3546.1.S1_at, orthologous to the query gene, Ta.26868.1.A1_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.8191.7GmaAffx.3546.1.S1_atAt1g09240--7e-1At2g23240plant EC metallothionein-like family 15 proteinO.I.H.G.S.X.
0.6080.7Gma.12151.1.S1_atAt1g09240--7e-16At5g48030GFA2 (GAMETOPHYTIC FACTOR 2)O.I.H.G.S.X.
0.6080.7Gma.10303.1.S1_atAt1g09240--2e-1At1g23220dynein light chain type 1 family proteinO.I.H.G.S.X.
0.5678.2Gma.3492.1.S1_atAt1g09240--2e+0At2g22320unknown proteinO.I.H.G.S.X.
0.5474.8Gma.10328.1.S1_x_atAt1g09240--3e+0At3g63190RRF (RIBOSOME RECYCLING FACTOR, CHLOROPLAST PRECURSOR)O.I.H.G.S.X.
0.5474.8GmaAffx.21928.1.A1_atAt1g09240--2e+0At1g17050SPS2 (Solanesyl diphosphate synthase 2)O.I.H.G.S.X.
0.5374.2Gma.15708.1.S1_atAt1g09240--9e-3At1g14686epsin N-terminal homology (ENTH) domain-containing protein / clathrin assembly protein-relatedO.I.H.G.S.X.
0.5273.1GmaAffx.23371.1.S1_atAt1g09240--1e+0At3g61860RSP31O.I.H.G.S.X.
0.5172.3Gma.3678.1.S1_atAt1g09240--1e-17At4g33250EIF3K (EUKARYOTIC TRANSLATION INITIATION FACTOR 3K)O.I.H.G.S.X.
0.5071.7GmaAffx.61077.1.S1_atAt1g09240--2e+0At1g69880ATH8 (thioredoxin H-type 8)O.I.H.G.S.X.
0.4665.5Gma.2609.2.A1_atAt1g09240--3e-9At5g11170ATP binding / ATP-dependent helicase/ helicase/ nucleic acid bindingO.I.H.G.S.X.
0.4563.9Gma.16950.1.S1_atAt1g09240--3e+0At5g05330DNA bindingO.I.H.G.S.X.
0.4463.3GmaAffx.42265.1.S1_atAt1g09240--1e-6At3g62940OTU-like cysteine protease family proteinO.I.H.G.S.X.
0.4360.6Gma.5264.1.S1_atAt1g09240--2e-4At5g04600RNA recognition motif (RRM)-containing proteinO.I.H.G.S.X.
0.4259.3Gma.6512.1.S1_atAt1g09240--2e-4At4g16830nuclear RNA-binding protein (RGGA)O.I.H.G.S.X.
0.4259.3Gma.16448.1.A1_atAt1g09240--6e-6At5g58470TAF15b (TBP-ASSOCIATED FACTOR 15b)O.I.H.G.S.X.
0.4259.3Gma.14129.1.A1_atAt1g09240--8e-1At1g52470hydrolaseO.I.H.G.S.X.
0.4259.3Gma.12187.1.A1_x_atAt1g09240--3e-4At5g37720RNA and export factor-binding protein, putativeO.I.H.G.S.X.
0.3853.3Gma.6621.1.S1_atAt1g09240--4e-22At2g44070GTP binding / translation initiation factorO.I.H.G.S.X.
0.3447.2GmaAffx.25596.1.S1_atAt1g09240--2e+0At2g21780unknown proteinO.I.H.G.S.X.
0.3447.2Gma.8091.1.S1_atAt1g09240--3e+0At1g10586transcription regulatorO.I.H.G.S.X.
0.3346.1Gma.4044.1.S1_atAt1g09240--9e-12At5g14520pescadillo-relatedO.I.H.G.S.X.
0.3346.1GmaAffx.43913.1.S1_atAt1g09240--9e-4At5g09880RNA recognition motif (RRM)-containing proteinO.I.H.G.S.X.
0.2839.0Gma.1845.1.S1_a_atAt1g09240--6e-84At5g20920EIF2 BETAO.I.H.G.S.X.
0.2633.9Gma.5660.1.S1_s_atAt1g09240--4e-120At3g13920EIF4A1 (EUKARYOTIC TRANSLATION INITIATION FACTOR 4A1)O.I.H.G.S.X.
0.2329.9GmaAffx.5376.2.S1_atAt1g09240--9e-17At5g4643060S ribosomal protein L32 (RPL32B)O.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Vitis_vinifera
Zea_mays



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