Co-expression analysis

Gene ID	Ta.26683.1.A1_at
Gene name
Homology with Arabidopsis	Similar to At2g23320: WRKY15 (HF=5e-1)
Module size	45 genes
NF	0.38
%ile	61.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.97	99.6	0.87	Ta.26683.1.A1_at	CD491565	-	-	5e-1	At2g23320	WRKY15	O.I.	H.G.	S.X.	Please select
0.55	76.8	0.93	Ta.26526.1.A1_at	CD491135	-	-	1e-3	At2g03280	unknown protein	O.I.	H.G.	S.X.	Please select
0.53	74.9	0.94	TaAffx.58227.1.S1_at	CA621342	-	-	1e+0	At5g52160	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	O.I.	H.G.	S.X.	Please select
0.51	73.0	0.95	TaAffx.58638.1.S1_at	CA617698	-	-	4e+0	At1g12805	nucleotide binding	O.I.	H.G.	S.X.	Please select
0.47	67.9	0.94	TaAffx.31791.1.S1_at	CA607567	-	-	7e-1	At5g26717	-	O.I.	H.G.	S.X.	Please select
0.47	67.9	0.93	TaAffx.81752.1.S1_at	CA682283	-	-	4e+0	At3g06600	unknown protein	O.I.	H.G.	S.X.	Please select
0.47	67.9	0.93	TaAffx.128748.3.S1_at	CA654733	-	-	1e+0	At4g33980	unknown protein	O.I.	H.G.	S.X.	Please select
0.46	66.8	0.93	TaAffx.129082.2.S1_at	CA610797	-	-	4e-3	At1g58280	-	O.I.	H.G.	S.X.	Please select
0.46	66.8	0.94	TaAffx.4913.1.S1_at	CA728728	-	-	2e+1	At5g67060	HEC1 (HECATE 1)	O.I.	H.G.	S.X.	Please select
0.45	65.2	0.93	TaAffx.30498.1.S1_at	CA624800	-	-	1e+1	At5g61270	PIF7 (PHYTOCHROME-INTERACTING FACTOR7)	O.I.	H.G.	S.X.	Please select
0.45	65.2	0.95	TaAffx.30673.1.S1_at	CA623010	-	-	7e-11	At4g25630	FIB2 (FIBRILLARIN 2)	O.I.	H.G.	S.X.	Please select
0.43	62.2	0.93	Ta.14146.3.S1_x_at	CA697368	-	-	2e+1	At5g24313	unknown protein	O.I.	H.G.	S.X.	Please select
0.43	62.2	0.93	Ta.17267.1.S1_at	CA622299	-	-	3e-10	At5g17920	ATMS1	O.I.	H.G.	S.X.	Please select
0.42	60.9	0.95	TaAffx.109025.3.S1_at	CA702122	-	-	2e-1	At1g08790	unknown protein	O.I.	H.G.	S.X.	Please select
0.41	59.6	0.94	Ta.4659.2.S1_at	CA725001	-	-	4e+0	At5g21060	homoserine dehydrogenase family protein	O.I.	H.G.	S.X.	Please select
0.41	59.6	0.95	TaAffx.112158.1.S1_at	CA626538	-	-	2e+1	At3g28590	unknown protein	O.I.	H.G.	S.X.	Please select
0.40	58.4	0.94	TaAffx.51397.1.S1_at	CA725473	-	-	4e-49	At1g23490	ATARF1 (ADP-RIBOSYLATION FACTOR 1)	O.I.	H.G.	S.X.	Please select
0.40	58.4	0.95	TaAffx.3664.1.S1_at	CD876496	-	-	2e+0	At2g47710	universal stress protein (USP) family protein	O.I.	H.G.	S.X.	Please select
0.39	56.1	0.95	TaAffx.29732.1.S1_at	CA636473	-	-	7e-1	At4g14550	IAA14 (INDOLE-3-ACETIC ACID INDUCIBLE 14)	O.I.	H.G.	S.X.	Please select
0.39	56.1	0.94	TaAffx.58533.1.S1_at	CA618813	-	-	1e+0	At5g47700	60S acidic ribosomal protein P1 (RPP1C)	O.I.	H.G.	S.X.	Please select
0.39	56.1	0.91	TaAffx.58987.1.S1_at	CA610580	-	-	9e-1	At1g37140	MCT1 (mei2 C-Terminal RRM only like 1)	O.I.	H.G.	S.X.	Please select
0.39	56.1	0.95	Ta.9084.3.S1_at	CA666296	-	-	1e+1	At5g50050	invertase/pectin methylesterase inhibitor family protein	O.I.	H.G.	S.X.	Please select
0.38	54.7	0.94	TaAffx.85817.1.S1_at	CA619362	-	-	4e+0	At4g17800	DNA-binding protein-related	O.I.	H.G.	S.X.	Please select
0.37	53.0	0.94	TaAffx.56155.1.S1_at	CA656564	-	-	1e+1	At5g26070	hydroxyproline-rich glycoprotein family protein	O.I.	H.G.	S.X.	Please select
0.37	53.0	0.93	TaAffx.78717.1.S1_at	CA728365	-	-	3e+0	At2g24570	WRKY17	O.I.	H.G.	S.X.	Please select
0.36	51.9	0.93	Ta.1472.1.A1_at	BE430276	-	-	9e-1	At1g66540	cytochrome P450, putative	O.I.	H.G.	S.X.	Please select
0.35	49.8	0.95	TaAffx.50210.1.S1_at	CA744417	-	-	7e-2	At1g60880	AGL56	O.I.	H.G.	S.X.	Please select
0.34	48.1	0.93	Ta.17435.1.S1_at	CA620845	-	-	7e+0	At4g22210	LCR85 (Low-molecular-weight cysteine-rich 85)	O.I.	H.G.	S.X.	Please select
0.34	48.1	0.94	TaAffx.25126.1.S1_at	CA705922	-	-	3e+0	At3g17460	PHD finger family protein	O.I.	H.G.	S.X.	Please select
0.34	48.1	0.95	Ta.3203.2.S1_x_at	CA621738	-	-	5e-6	At1g27530	-	O.I.	H.G.	S.X.	Please select
0.33	46.9	0.95	Ta.3911.2.S1_s_at	CA604151	-	-	4e+0	At2g44290	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein (YLS3)	O.I.	H.G.	S.X.	Please select
0.32	44.4	0.93	Ta.4925.2.S1_a_at	BJ273999	-	-	4e+0	At4g12760	unknown protein	O.I.	H.G.	S.X.	Please select
0.32	44.4	0.95	TaAffx.78861.1.S1_at	CA725589	-	-	1e+1	At3g28070	nodulin MtN21 family protein	O.I.	H.G.	S.X.	Please select
0.32	44.4	0.94	TaAffx.61664.1.S1_at	CA629036	-	-	2e-1	At1g59171	ATP binding / inositol pentakisphosphate 2-kinase	O.I.	H.G.	S.X.	Please select
0.32	44.4	0.95	TaAffx.55653.1.S1_at	CA663094	-	-	1e+1	At4g20030	RNA recognition motif (RRM)-containing protein	O.I.	H.G.	S.X.	Please select
0.32	44.4	0.94	TaAffx.83097.1.S1_at	CA662094	-	-	7e-2	At1g75950	SKP1 (S PHASE KINASE-ASSOCIATED PROTEIN 1)	O.I.	H.G.	S.X.	Please select
0.30	40.9	0.94	TaAffx.132656.2.S1_at	CA600729	-	-	1e+0	At1g76500	SOB3 (SUPPRESSOR OF PHYB-4#3)	O.I.	H.G.	S.X.	Please select
0.30	40.9	0.93	Ta.16516.1.S1_at	CA607620	-	-	9e-1	At5g35475	-	O.I.	H.G.	S.X.	Please select
0.30	40.9	0.94	TaAffx.90026.1.S1_at	BQ609544	-	-	3e-1	At3g20830	protein kinase family protein	O.I.	H.G.	S.X.	Please select
0.29	39.2	0.94	TaAffx.64474.2.S1_at	BJ289837	-	-	3e-1	At3g07490	AGD11 (ARF-GAP domain 11)	O.I.	H.G.	S.X.	Please select
0.29	39.2	0.94	TaAffx.5596.1.S1_at	CA705635	-	-	3e+0	At1g12250	thylakoid lumenal protein-related	O.I.	H.G.	S.X.	Please select
0.26	33.6	0.92	Ta.14479.3.S1_x_at	CA630294	-	-	7e-18	At2g05830	eukaryotic translation initiation factor 2B family protein / eIF-2B family protein	O.I.	H.G.	S.X.	Please select
0.25	32.1	0.95	TaAffx.95075.1.S1_at	BJ251238	-	-	1e+0	At2g01818	zinc ion binding	O.I.	H.G.	S.X.	Please select
0.20	24.0	0.94	TaAffx.106849.3.S1_at	BJ216171	-	-	1e-1	At4g39410	WRKY13	O.I.	H.G.	S.X.	Please select
0.14	15.8	0.94	TaAffx.51434.1.S1_at	CA725005	-	-	1e+1	At5g28919	-	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
7.4	98.6	GSM298067	Leaf tissue of Paragon at 5 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
5.7	97.9	GSM250900	TcLr34_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
5.3	97.6	GSM298092	Crown tissue of Solstice at 3 weeks post germination	GSE11774	Expression data from cold treated wheat cultivars
4.8	97.2	GSM298070	Leaf tissue of Paragon at 9 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
4.1	96.4	GSM250899	TcLr34_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
4.1	96.4	GSM250898	TcLr1_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
3.5	95.4	GSM111233	genotype H8 developing seed at 5 days after anthesis, biological rep2	GSE4935	wheat expression level polymorphism study 39 genotypes 2 biological reps
3.1	94.5	GSM250897	TcLr1_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
2.8	93.6	GSM250896	Tc_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
2.6	92.9	GSM250895	Tc_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

Zea_mays

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