Co-expression analysis

Gene ID Ta.26662.1.A1_at
Gene name
Homology with ArabidopsisSimilar to At4g14160: transport protein, putative (HF=3e-17)
Module size 6 genes
NF 0.02
%ile 7.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9198.20.71Ta.26662.1.A1_atCD491499--3e-17At4g14160transport protein, putativeO.I.H.G.S.X.
0.045.80.96Ta.9610.1.S1_x_atCD936037--5e-4At1g29040unknown proteinO.I.H.G.S.X.
0.034.70.96Ta.12665.1.S1_atCK196684--2e-76At5g10840endomembrane protein 70, putativeO.I.H.G.S.X.
0.023.60.97Ta.24987.1.S1_atCK166034Cytosolic malate dehydrogenase-1e-64At5g43330malate dehydrogenase, cytosolic, putativeO.I.H.G.S.X.
0.012.40.95TaAffx.98378.1.S1_atCA735372--7e-2At2g37035unknown proteinO.I.H.G.S.X.
0.012.40.91Ta.6707.1.A1_atBJ310002--1e+0At1g50390fructokinase-relatedO.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
7.398.6GSM314278tissue type: anthers, before anthesis - rep1GSE12508Transcription patterns during wheat developmentLink to GEO
6.298.1GSM314256tissue type: germinating seed, root - rep3GSE12508Transcription patterns during wheat developmentLink to GEO
5.998.0GSM314254tissue type: germinating seed, root - rep1GSE12508Transcription patterns during wheat developmentLink to GEO
5.998.0GSM314280tissue type: anthers, before anthesis - rep3GSE12508Transcription patterns during wheat developmentLink to GEO
5.497.7GSM250900TcLr34_3dpi_inoculated_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
5.497.7GSM314279tissue type: anthers, before anthesis - rep2GSE12508Transcription patterns during wheat developmentLink to GEO
5.397.6GSM314255tissue type: germinating seed, root - rep2GSE12508Transcription patterns during wheat developmentLink to GEO
5.097.4GSM314260tissue type: seedling, root - rep1GSE12508Transcription patterns during wheat developmentLink to GEO
4.797.1GSM250895Tc_3dpi_mock_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
4.096.3GSM250899TcLr34_3dpi_mock_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO

Inter-species module comparison

A co-expression module including the maize gene, Zm.813.2.A1_at, orthologous to the query gene, Ta.26662.1.A1_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.9499.5Zm.813.2.A1_atAt4g14160--5e-15At4g14160transport protein, putativeO.I.H.G.S.X.
0.5065.7Zm.869.2.S1_atAt4g14160Hypothetical protein LOC100192365-6e+0At5g15560unknown proteinO.I.H.G.S.X.
0.4251.3Zm.16049.2.A1_atAt4g14160--3e-4At5g0385040S ribosomal protein S28 (RPS28B)O.I.H.G.S.X.
0.4048.5Zm.4004.1.S1_atAt4g14160histone acetyl transferase MYST family 101-1e-101At5g64610HAM1 (HISTONE ACETYLTRANSFERASE OF THE MYST FAMILY 1)O.I.H.G.S.X.
0.3336.0Zm.9839.1.A1_atAt4g14160Hypothetical protein LOC100193033-3e+0At2g17300unknown proteinO.I.H.G.S.X.
0.3131.6Zm.5412.1.A1_atAt4g14160hypothetical protein LOC100280167-3e-6At4g02630protein kinase family proteinO.I.H.G.S.X.
0.1912.8Zm.1194.1.S1_atAt4g14160fasciclin-like arabinogalactan protein 10-2e-1At5g52930unknown proteinO.I.H.G.S.X.
0.136.8Zm.8986.1.A1_atAt4g14160dihydroflavonol-4-reductase-1e-7At5g58490cinnamoyl-CoA reductase familyO.I.H.G.S.X.
0.115.3ZmAffx.1015.1.S1_atAt4g14160Protein kinase catalytic domain-2e-1At2g19820LBD9 (LOB DOMAIN-CONTAINING PROTEIN 9)O.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Vitis_vinifera



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