Co-expression analysis

Gene ID Ta.26662.1.A1_at
Gene name
Homology with ArabidopsisSimilar to At4g14160: transport protein, putative (HF=3e-17)
Module size 6 genes
NF 0.02
%ile 7.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9198.20.71Ta.26662.1.A1_atCD491499--3e-17At4g14160transport protein, putativeO.I.H.G.S.X.
0.045.80.96Ta.9610.1.S1_x_atCD936037--5e-4At1g29040unknown proteinO.I.H.G.S.X.
0.034.70.96Ta.12665.1.S1_atCK196684--2e-76At5g10840endomembrane protein 70, putativeO.I.H.G.S.X.
0.023.60.97Ta.24987.1.S1_atCK166034Cytosolic malate dehydrogenase-1e-64At5g43330malate dehydrogenase, cytosolic, putativeO.I.H.G.S.X.
0.012.40.95TaAffx.98378.1.S1_atCA735372--7e-2At2g37035unknown proteinO.I.H.G.S.X.
0.012.40.91Ta.6707.1.A1_atBJ310002--1e+0At1g50390fructokinase-relatedO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
7.398.6GSM314278tissue type: anthers, before anthesis - rep1GSE12508Transcription patterns during wheat developmentLink to GEO
6.298.1GSM314256tissue type: germinating seed, root - rep3GSE12508Transcription patterns during wheat developmentLink to GEO
5.998.0GSM314254tissue type: germinating seed, root - rep1GSE12508Transcription patterns during wheat developmentLink to GEO
5.998.0GSM314280tissue type: anthers, before anthesis - rep3GSE12508Transcription patterns during wheat developmentLink to GEO
5.497.7GSM250900TcLr34_3dpi_inoculated_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
5.497.7GSM314279tissue type: anthers, before anthesis - rep2GSE12508Transcription patterns during wheat developmentLink to GEO
5.397.6GSM314255tissue type: germinating seed, root - rep2GSE12508Transcription patterns during wheat developmentLink to GEO
5.097.4GSM314260tissue type: seedling, root - rep1GSE12508Transcription patterns during wheat developmentLink to GEO
4.797.1GSM250895Tc_3dpi_mock_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
4.096.3GSM250899TcLr34_3dpi_mock_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO

Inter-species module comparison

A co-expression module including the poplar gene, Ptp.5961.1.S1_at, orthologous to the query gene, Ta.26662.1.A1_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.7493.8Ptp.5961.1.S1_atAt4g14160hypothetical protein-6e-63At3g23660transport protein, putativeO.I.H.G.S.X.
0.5582.2PtpAffx.3505.2.S1_a_atAt4g14160hypothetical protein-4e-27At3g52190PHF1 (PHOSPHATE TRANSPORTER TRAFFIC FACILITATOR1)O.I.H.G.S.X.
0.5380.5PtpAffx.7182.2.S1_atAt4g14160--6e+0At2g30930unknown proteinO.I.H.G.S.X.
0.5279.4PtpAffx.207111.1.S1_x_atAt4g14160hypothetical protein-2e-34At5g65000nucleotide-sugar transporter family proteinO.I.H.G.S.X.
0.5178.9PtpAffx.7210.2.A1_atAt4g14160hypothetical protein-1e-9At2g46260BTB/POZ domain-containing proteinO.I.H.G.S.X.
0.5078.6PtpAffx.113579.1.S1_s_atAt4g14160hypothetical protein-4e-31At1g28490SYP61 (SYNTAXIN OF PLANTS 61)O.I.H.G.S.X.
0.4774.6PtpAffx.13438.1.S1_s_atAt4g14160hypothetical protein-2e-96At3g28715H+-transporting two-sector ATPase, putativeO.I.H.G.S.X.
0.4471.9PtpAffx.100134.1.A1_s_atAt4g14160--1e+1At1g01250AP2 domain-containing transcription factor, putativeO.I.H.G.S.X.
0.4067.0PtpAffx.25116.1.A1_atAt4g14160hypothetical protein-2e-8At3g54130josephin family proteinO.I.H.G.S.X.
0.4067.0PtpAffx.43623.2.A1_a_atAt4g14160hypothetical protein-7e-5At3g03610phagocytosis and cell motility protein ELMO1-relatedO.I.H.G.S.X.
0.3964.6Ptp.6307.1.S1_atAt4g14160hypothetical protein-9e-6At5g16510reversibly glycosylated polypeptide, putativeO.I.H.G.S.X.
0.3863.7PtpAffx.15375.1.S1_atAt4g14160--5e-20At3g53000AtPP2-A15 (Phloem protein 2-A15)O.I.H.G.S.X.
0.3762.3Ptp.312.1.S1_a_atAt4g14160hypothetical protein-1e-4At5g05750DNAJ heat shock N-terminal domain-containing proteinO.I.H.G.S.X.
0.3458.3PtpAffx.202120.1.S1_x_atAt4g14160hypothetical protein-3e-83At2g35170MORN (Membrane Occupation and Recognition Nexus) repeat-containing protein /phosphatidylinositol-4-phosphate 5-kinase-relatedO.I.H.G.S.X.
0.3458.3PtpAffx.79437.1.S1_s_atAt4g14160hypothetical protein-5e-43At2g30980ASKdZeta (Arabidopsis SHAGGY-related protein kinase dZeta)O.I.H.G.S.X.
0.3357.5PtpAffx.13792.1.S1_atAt4g14160hypothetical protein-4e-20At3g49390CID10O.I.H.G.S.X.
0.3153.7PtpAffx.161118.1.S1_s_atAt4g14160hypothetical protein-6e-18At4g16760ACX1 (ACYL-COA OXIDASE 1)O.I.H.G.S.X.
0.2950.5PtpAffx.23209.1.S1_atAt4g14160hypothetical protein-2e-35At4g22330ATCES1O.I.H.G.S.X.
0.2850.5PtpAffx.12284.1.A1_s_atAt4g14160hypothetical protein-6e-81At3g46060ATRAB8AO.I.H.G.S.X.
0.2645.2Ptp.5593.1.S1_atAt4g14160hypothetical protein-7e-15At4g26240unknown proteinO.I.H.G.S.X.
0.2034.6PtpAffx.4529.1.S1_atAt4g14160hypothetical protein-4e-138At5g03290isocitrate dehydrogenase, putative / NAD+ isocitrate dehydrogenase, putativeO.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Vitis_vinifera
Zea_mays



Back to the CoP portal site

Back to the KAGIANA project homepage