Co-expression analysis

Gene ID	Ta.26662.1.A1_at
Gene name
Homology with Arabidopsis	Similar to At4g14160: transport protein, putative (HF=3e-17)
Module size	6 genes
NF	0.02
%ile	7.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.2	0.71	Ta.26662.1.A1_at	CD491499	-	-	3e-17	At4g14160	transport protein, putative	O.I.	H.G.	S.X.	Please select
0.04	5.8	0.96	Ta.9610.1.S1_x_at	CD936037	-	-	5e-4	At1g29040	unknown protein	O.I.	H.G.	S.X.	Please select
0.03	4.7	0.96	Ta.12665.1.S1_at	CK196684	-	-	2e-76	At5g10840	endomembrane protein 70, putative	O.I.	H.G.	S.X.	Please select
0.02	3.6	0.97	Ta.24987.1.S1_at	CK166034	Cytosolic malate dehydrogenase	-	1e-64	At5g43330	malate dehydrogenase, cytosolic, putative	O.I.	H.G.	S.X.	Please select
0.01	2.4	0.95	TaAffx.98378.1.S1_at	CA735372	-	-	7e-2	At2g37035	unknown protein	O.I.	H.G.	S.X.	Please select
0.01	2.4	0.91	Ta.6707.1.A1_at	BJ310002	-	-	1e+0	At1g50390	fructokinase-related	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
7.3	98.6	GSM314278	tissue type: anthers, before anthesis - rep1	GSE12508	Transcription patterns during wheat development
6.2	98.1	GSM314256	tissue type: germinating seed, root - rep3	GSE12508	Transcription patterns during wheat development
5.9	98.0	GSM314254	tissue type: germinating seed, root - rep1	GSE12508	Transcription patterns during wheat development
5.9	98.0	GSM314280	tissue type: anthers, before anthesis - rep3	GSE12508	Transcription patterns during wheat development
5.4	97.7	GSM250900	TcLr34_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
5.4	97.7	GSM314279	tissue type: anthers, before anthesis - rep2	GSE12508	Transcription patterns during wheat development
5.3	97.6	GSM314255	tissue type: germinating seed, root - rep2	GSE12508	Transcription patterns during wheat development
5.0	97.4	GSM314260	tissue type: seedling, root - rep1	GSE12508	Transcription patterns during wheat development
4.7	97.1	GSM250895	Tc_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
4.0	96.3	GSM250899	TcLr34_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat

Inter-species module comparison

A co-expression module including the poplar gene, Ptp.5961.1.S1_at, orthologous to the query gene, Ta.26662.1.A1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.74	93.8	Ptp.5961.1.S1_at	At4g14160	hypothetical protein	-	6e-63	At3g23660	transport protein, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.55	82.2	PtpAffx.3505.2.S1_a_at	At4g14160	hypothetical protein	-	4e-27	At3g52190	PHF1 (PHOSPHATE TRANSPORTER TRAFFIC FACILITATOR1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.53	80.5	PtpAffx.7182.2.S1_at	At4g14160	-	-	6e+0	At2g30930	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.52	79.4	PtpAffx.207111.1.S1_x_at	At4g14160	hypothetical protein	-	2e-34	At5g65000	nucleotide-sugar transporter family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.51	78.9	PtpAffx.7210.2.A1_at	At4g14160	hypothetical protein	-	1e-9	At2g46260	BTB/POZ domain-containing protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.50	78.6	PtpAffx.113579.1.S1_s_at	At4g14160	hypothetical protein	-	4e-31	At1g28490	SYP61 (SYNTAXIN OF PLANTS 61)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.47	74.6	PtpAffx.13438.1.S1_s_at	At4g14160	hypothetical protein	-	2e-96	At3g28715	H+-transporting two-sector ATPase, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.44	71.9	PtpAffx.100134.1.A1_s_at	At4g14160	-	-	1e+1	At1g01250	AP2 domain-containing transcription factor, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.40	67.0	PtpAffx.25116.1.A1_at	At4g14160	hypothetical protein	-	2e-8	At3g54130	josephin family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.40	67.0	PtpAffx.43623.2.A1_a_at	At4g14160	hypothetical protein	-	7e-5	At3g03610	phagocytosis and cell motility protein ELMO1-related	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.39	64.6	Ptp.6307.1.S1_at	At4g14160	hypothetical protein	-	9e-6	At5g16510	reversibly glycosylated polypeptide, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.38	63.7	PtpAffx.15375.1.S1_at	At4g14160	-	-	5e-20	At3g53000	AtPP2-A15 (Phloem protein 2-A15)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.37	62.3	Ptp.312.1.S1_a_at	At4g14160	hypothetical protein	-	1e-4	At5g05750	DNAJ heat shock N-terminal domain-containing protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.34	58.3	PtpAffx.202120.1.S1_x_at	At4g14160	hypothetical protein	-	3e-83	At2g35170	MORN (Membrane Occupation and Recognition Nexus) repeat-containing protein /phosphatidylinositol-4-phosphate 5-kinase-related	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.34	58.3	PtpAffx.79437.1.S1_s_at	At4g14160	hypothetical protein	-	5e-43	At2g30980	ASKdZeta (Arabidopsis SHAGGY-related protein kinase dZeta)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.33	57.5	PtpAffx.13792.1.S1_at	At4g14160	hypothetical protein	-	4e-20	At3g49390	CID10	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.31	53.7	PtpAffx.161118.1.S1_s_at	At4g14160	hypothetical protein	-	6e-18	At4g16760	ACX1 (ACYL-COA OXIDASE 1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.29	50.5	PtpAffx.23209.1.S1_at	At4g14160	hypothetical protein	-	2e-35	At4g22330	ATCES1	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.28	50.5	PtpAffx.12284.1.A1_s_at	At4g14160	hypothetical protein	-	6e-81	At3g46060	ATRAB8A	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.26	45.2	Ptp.5593.1.S1_at	At4g14160	hypothetical protein	-	7e-15	At4g26240	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.20	34.6	PtpAffx.4529.1.S1_at	At4g14160	hypothetical protein	-	4e-138	At5g03290	isocitrate dehydrogenase, putative / NAD+ isocitrate dehydrogenase, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Vitis_vinifera

Zea_mays

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