Co-expression analysis

Gene ID Ta.26662.1.A1_at
Gene name
Homology with ArabidopsisSimilar to At4g14160: transport protein, putative (HF=3e-17)
Module size 6 genes
NF 0.02
%ile 7.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9198.20.71Ta.26662.1.A1_atCD491499--3e-17At4g14160transport protein, putativeO.I.H.G.S.X.
0.045.80.96Ta.9610.1.S1_x_atCD936037--5e-4At1g29040unknown proteinO.I.H.G.S.X.
0.034.70.96Ta.12665.1.S1_atCK196684--2e-76At5g10840endomembrane protein 70, putativeO.I.H.G.S.X.
0.023.60.97Ta.24987.1.S1_atCK166034Cytosolic malate dehydrogenase-1e-64At5g43330malate dehydrogenase, cytosolic, putativeO.I.H.G.S.X.
0.012.40.95TaAffx.98378.1.S1_atCA735372--7e-2At2g37035unknown proteinO.I.H.G.S.X.
0.012.40.91Ta.6707.1.A1_atBJ310002--1e+0At1g50390fructokinase-relatedO.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
7.398.6GSM314278tissue type: anthers, before anthesis - rep1GSE12508Transcription patterns during wheat developmentLink to GEO
6.298.1GSM314256tissue type: germinating seed, root - rep3GSE12508Transcription patterns during wheat developmentLink to GEO
5.998.0GSM314254tissue type: germinating seed, root - rep1GSE12508Transcription patterns during wheat developmentLink to GEO
5.998.0GSM314280tissue type: anthers, before anthesis - rep3GSE12508Transcription patterns during wheat developmentLink to GEO
5.497.7GSM250900TcLr34_3dpi_inoculated_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
5.497.7GSM314279tissue type: anthers, before anthesis - rep2GSE12508Transcription patterns during wheat developmentLink to GEO
5.397.6GSM314255tissue type: germinating seed, root - rep2GSE12508Transcription patterns during wheat developmentLink to GEO
5.097.4GSM314260tissue type: seedling, root - rep1GSE12508Transcription patterns during wheat developmentLink to GEO
4.797.1GSM250895Tc_3dpi_mock_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
4.096.3GSM250899TcLr34_3dpi_mock_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO

Inter-species module comparison

A co-expression module including the Arabidopsis gene, At4g14160, orthologous to the query gene, Ta.26662.1.A1_at

VF%ileGene IDRepr. IDGene NameFunc.O.I.H.G.S.X.Other DB
0.3541.6At4g14160827055transport protein, putativeF:protein binding, transporter activity, zinc ion binding;P:intracellular protein transport, transport, ER to Golgi vesicle-mediated transport;C:COPII vesicle coat;MFOPO.I.H.G.S.X.
0.7385.5At4g32640829399protein binding / zinc ion bindingF:protein binding, zinc ion binding;P:intracellular protein transport, ER to Golgi vesicle-mediated transport;C:COPII vesicle coat;MFOBPVAO.I.H.G.S.X.
0.6378.1At3g10380820201SEC8 (SUBUNIT OF EXOCYST COMPLEX 8)Subunit of the Putative Arabidopsis Exocyst ComplexO.I.H.G.S.X.
0.5570.6At1g71820843512SEC6F:molecular_function unknown;P:pollen germination, pollen tube growth;C:plasma membrane, exocyst;MFOPBAO.I.H.G.S.X.
0.5570.6At3g07100819896protein transport protein Sec24, putativeF:protein binding, transporter activity, zinc ion binding;P:intracellular protein transport, transport, ER to Golgi vesicle-mediated transport;C:COPII vesicle coat;MFBOPVAO.I.H.G.S.X.
0.5368.6At5g06600830548UBP12 (UBIQUITIN-SPECIFIC PROTEASE 12)Encodes a ubiquitin-specific protease.O.I.H.G.S.X.
0.4659.8At5g22770832340alpha-ADR (alpha-adaptin)F:protein transporter activity, protein binding, binding;P:intracellular protein transport, vesicle-mediated transport, protein transport;C:plasma membrane, membrane;MOFPO.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Vitis_vinifera
Zea_mays



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