Co-expression analysis

Gene ID Ta.26624.1.A1_at
Gene name
Homology with ArabidopsisSimilar to At1g03030: phosphoribulokinase/uridine kinase family protein (HF=2e-5)
Module size 6 genes
NF 0.04
%ile 10.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9198.20.68Ta.26624.1.A1_atCD491395--2e-5At1g03030phosphoribulokinase/uridine kinase family proteinO.I.H.G.S.X.
0.3651.90.92Ta.497.3.S1_x_atCA722566--7e-8At3g23660transport protein, putativeO.I.H.G.S.X.
0.045.80.88Ta.30416.2.S1_a_atCA651932--7e-11At2g18700ATTPS11O.I.H.G.S.X.
0.045.80.90TaAffx.85023.1.S1_atCA626261--4e+0At4g24740AFC2 (ARABIDOPSIS FUS3-COMPLEMENTING GENE 2)O.I.H.G.S.X.
0.034.70.92Ta.3083.2.A1_atBJ254365--4e+0At3g05602unknown proteinO.I.H.G.S.X.
0.012.40.92Ta.3478.3.S1_x_atCA637826--2e-11At1g69670CUL3B (CULLIN 3B)O.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
30.499.8GSM298070Leaf tissue of Paragon at 9 weeks post germination, biological rep 2GSE11774Expression data from cold treated wheat cultivarsLink to GEO
6.198.1GSM298092Crown tissue of Solstice at 3 weeks post germinationGSE11774Expression data from cold treated wheat cultivarsLink to GEO
5.097.4GSM250899TcLr34_3dpi_mock_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
4.196.4GSM298090Leaf tissue of Solstice at 5 weeks post germinationGSE11774Expression data from cold treated wheat cultivarsLink to GEO
3.896.0GSM250895Tc_3dpi_mock_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
3.495.2GSM343682Wheat var. Kennedy_control_rep2GSE13660Gene expression analysis of the wheat response to infection by Fusarium pseudograminearumLink to GEO
3.495.2GSM343678Wheat var. Kennedy_control_rep1GSE13660Gene expression analysis of the wheat response to infection by Fusarium pseudograminearumLink to GEO
3.395.0GSM343688Wheat var. Kennedy_Fp inoculated_rep3GSE13660Gene expression analysis of the wheat response to infection by Fusarium pseudograminearumLink to GEO
3.194.5GSM250898TcLr1_3dpi_inoculated_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
3.194.5GSM343685Wheat var. Kennedy_control_rep3GSE13660Gene expression analysis of the wheat response to infection by Fusarium pseudograminearumLink to GEO

Inter-species module comparison

A co-expression module including the maize gene, Zm.18430.1.S1_at, orthologous to the query gene, Ta.26624.1.A1_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.5267.3Zm.18430.1.S1_atAt1g03030hypothetical protein LOC100272360-3e-9At1g03030phosphoribulokinase/uridine kinase family proteinO.I.H.G.S.X.
0.7691.1Zm.5995.2.S1_a_atAt1g03030--2e+0At4g14385-O.I.H.G.S.X.
0.7490.3Zm.13417.1.A1_atAt1g03030hypothetical protein LOC100193979-4e-1At3g05830-O.I.H.G.S.X.
0.7188.2Zm.6228.1.A1_atAt1g03030--1e+0At1g64370unknown proteinO.I.H.G.S.X.
0.5674.4Zm.9290.1.A1_atAt1g03030hypothetical protein LOC100192546-7e-1At5g58260-O.I.H.G.S.X.
0.5674.4Zm.218.1.A1_a_atAt1g03030ABA stimulation MAP kinase-6e-42At2g43790ATMPK6 (ARABIDOPSIS THALIANA MAP KINASE 6)O.I.H.G.S.X.
0.5369.1Zm.14792.1.A1_atAt1g03030--4e+0At3g62340WRKY68O.I.H.G.S.X.
0.5369.1Zm.4762.1.A1_atAt1g03030--2e-6At1g25540PFT1 (PHYTOCHROME AND FLOWERING TIME 1)O.I.H.G.S.X.
0.4861.3Zm.18278.1.S1_atAt1g03030--1e-26At3g52200LTA3O.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Vitis_vinifera



Back to the CoP portal site

Back to the KAGIANA project homepage