Co-expression analysis

Gene ID	Ta.26624.1.A1_at
Gene name
Homology with Arabidopsis	Similar to At1g03030: phosphoribulokinase/uridine kinase family protein (HF=2e-5)
Module size	6 genes
NF	0.04
%ile	10.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.2	0.68	Ta.26624.1.A1_at	CD491395	-	-	2e-5	At1g03030	phosphoribulokinase/uridine kinase family protein	O.I.	H.G.	S.X.	Please select
0.36	51.9	0.92	Ta.497.3.S1_x_at	CA722566	-	-	7e-8	At3g23660	transport protein, putative	O.I.	H.G.	S.X.	Please select
0.04	5.8	0.88	Ta.30416.2.S1_a_at	CA651932	-	-	7e-11	At2g18700	ATTPS11	O.I.	H.G.	S.X.	Please select
0.04	5.8	0.90	TaAffx.85023.1.S1_at	CA626261	-	-	4e+0	At4g24740	AFC2 (ARABIDOPSIS FUS3-COMPLEMENTING GENE 2)	O.I.	H.G.	S.X.	Please select
0.03	4.7	0.92	Ta.3083.2.A1_at	BJ254365	-	-	4e+0	At3g05602	unknown protein	O.I.	H.G.	S.X.	Please select
0.01	2.4	0.92	Ta.3478.3.S1_x_at	CA637826	-	-	2e-11	At1g69670	CUL3B (CULLIN 3B)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
30.4	99.8	GSM298070	Leaf tissue of Paragon at 9 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
6.1	98.1	GSM298092	Crown tissue of Solstice at 3 weeks post germination	GSE11774	Expression data from cold treated wheat cultivars
5.0	97.4	GSM250899	TcLr34_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
4.1	96.4	GSM298090	Leaf tissue of Solstice at 5 weeks post germination	GSE11774	Expression data from cold treated wheat cultivars
3.8	96.0	GSM250895	Tc_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
3.4	95.2	GSM343682	Wheat var. Kennedy_control_rep2	GSE13660	Gene expression analysis of the wheat response to infection by Fusarium pseudograminearum
3.4	95.2	GSM343678	Wheat var. Kennedy_control_rep1	GSE13660	Gene expression analysis of the wheat response to infection by Fusarium pseudograminearum
3.3	95.0	GSM343688	Wheat var. Kennedy_Fp inoculated_rep3	GSE13660	Gene expression analysis of the wheat response to infection by Fusarium pseudograminearum
3.1	94.5	GSM250898	TcLr1_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
3.1	94.5	GSM343685	Wheat var. Kennedy_control_rep3	GSE13660	Gene expression analysis of the wheat response to infection by Fusarium pseudograminearum

Inter-species module comparison

A co-expression module including the grape gene, 1611950_at, orthologous to the query gene, Ta.26624.1.A1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.60	81.9	1611950_at	At1g03030	hypothetical protein LOC100254581	-	5e-31	At1g03030	phosphoribulokinase/uridine kinase family protein	O.I.	H.G.	S.X.	Please select
0.48	68.8	1615058_at	At1g03030	hypothetical protein LOC100251131	-	4e+0	At3g28290	AT14A	O.I.	H.G.	S.X.	Please select
0.43	61.5	1613489_at	At1g03030	-	-	5e+0	At3g25572	CPuORF11 (Conserved peptide upstream open reading frame 11)	O.I.	H.G.	S.X.	Please select
0.40	57.7	1610376_at	At1g03030	hypothetical protein LOC100241274	-	8e-6	At5g65540	unknown protein	O.I.	H.G.	S.X.	Please select
0.34	46.8	1615991_s_at	At1g03030	hypothetical protein LOC100241833	-	1e-22	At4g38130	HD1 (HISTONE DEACETYLASE 1)	O.I.	H.G.	S.X.	Please select
0.27	34.0	1609452_at	At1g03030	hypothetical protein LOC100249768	-	3e-1	At4g31460	ribosomal protein L28 family protein	O.I.	H.G.	S.X.	Please select
0.18	19.4	1619248_at	At1g03030	hypothetical protein LOC100264750	-	3e-1	At5g18100	CSD3 (copper/zinc superoxide dismutase 3)	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Zea_mays

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