Co-expression analysis

Gene ID	Ta.26624.1.A1_at
Gene name
Homology with Arabidopsis	Similar to At1g03030: phosphoribulokinase/uridine kinase family protein (HF=2e-5)
Module size	6 genes
NF	0.04
%ile	10.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.2	0.68	Ta.26624.1.A1_at	CD491395	-	-	2e-5	At1g03030	phosphoribulokinase/uridine kinase family protein	O.I.	H.G.	S.X.	Please select
0.36	51.9	0.92	Ta.497.3.S1_x_at	CA722566	-	-	7e-8	At3g23660	transport protein, putative	O.I.	H.G.	S.X.	Please select
0.04	5.8	0.88	Ta.30416.2.S1_a_at	CA651932	-	-	7e-11	At2g18700	ATTPS11	O.I.	H.G.	S.X.	Please select
0.04	5.8	0.90	TaAffx.85023.1.S1_at	CA626261	-	-	4e+0	At4g24740	AFC2 (ARABIDOPSIS FUS3-COMPLEMENTING GENE 2)	O.I.	H.G.	S.X.	Please select
0.03	4.7	0.92	Ta.3083.2.A1_at	BJ254365	-	-	4e+0	At3g05602	unknown protein	O.I.	H.G.	S.X.	Please select
0.01	2.4	0.92	Ta.3478.3.S1_x_at	CA637826	-	-	2e-11	At1g69670	CUL3B (CULLIN 3B)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
30.4	99.8	GSM298070	Leaf tissue of Paragon at 9 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
6.1	98.1	GSM298092	Crown tissue of Solstice at 3 weeks post germination	GSE11774	Expression data from cold treated wheat cultivars
5.0	97.4	GSM250899	TcLr34_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
4.1	96.4	GSM298090	Leaf tissue of Solstice at 5 weeks post germination	GSE11774	Expression data from cold treated wheat cultivars
3.8	96.0	GSM250895	Tc_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
3.4	95.2	GSM343682	Wheat var. Kennedy_control_rep2	GSE13660	Gene expression analysis of the wheat response to infection by Fusarium pseudograminearum
3.4	95.2	GSM343678	Wheat var. Kennedy_control_rep1	GSE13660	Gene expression analysis of the wheat response to infection by Fusarium pseudograminearum
3.3	95.0	GSM343688	Wheat var. Kennedy_Fp inoculated_rep3	GSE13660	Gene expression analysis of the wheat response to infection by Fusarium pseudograminearum
3.1	94.5	GSM250898	TcLr1_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
3.1	94.5	GSM343685	Wheat var. Kennedy_control_rep3	GSE13660	Gene expression analysis of the wheat response to infection by Fusarium pseudograminearum

Inter-species module comparison

A co-expression module including the poplar gene, PtpAffx.161801.1.S1_at, orthologous to the query gene, Ta.26624.1.A1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.59	84.9	PtpAffx.161801.1.S1_at	At1g03030	hypothetical protein	-	1e-35	At1g03030	phosphoribulokinase/uridine kinase family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.46	73.7	PtpAffx.29519.1.S1_at	At1g03030	hypothetical protein	-	7e-66	At1g13560	AAPT1 (AMINOALCOHOLPHOSPHOTRANSFERASE 1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.46	73.7	Ptp.5499.1.A1_a_at	At1g03030	hypothetical protein	-	4e-47	At4g24440	transcription initiation factor IIA gamma chain / TFIIA-gamma (TFIIA-S)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.37	62.3	Ptp.1548.1.S1_at	At1g03030	-	-	4e-26	At1g51710	UBP6 (UBIQUITIN-SPECIFIC PROTEASE 6)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.32	55.2	Ptp.8010.1.A1_s_at	At1g03030	hypothetical protein	-	4e-21	At3g03330	short-chain dehydrogenase/reductase (SDR) family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.31	53.7	PtpAffx.7327.1.S1_s_at	At1g03030	hypothetical protein	-	2e-3	At1g71840	transducin family protein / WD-40 repeat family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.30	52.0	PtpAffx.60096.1.S1_at	At1g03030	hypothetical protein	-	1e-38	At4g25440	ZFWD1 (zinc finger WD40 repeat protein 1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.22	38.3	Ptp.359.2.S1_a_at	At1g03030	hypothetical protein	-	3e-8	At5g05987	PRA1.A2 (PRENYLATED RAB ACCEPTOR 1.A2)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.20	34.6	PtpAffx.23802.2.S1_at	At1g03030	hypothetical protein	-	1e-41	At3g04500	RNA recognition motif (RRM)-containing protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Vitis_vinifera

Zea_mays

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