CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Ta.26624.1.A1_at

Gene name
Homology with Arabidopsis Similar to At1g03030: phosphoribulokinase/uridine kinase family protein (HF=2e-5)

Module size 6 genes

NF 0.04

%ile 10.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 98.2 0.68 Ta.26624.1.A1_at CD491395 - - 2e-5 At1g03030 phosphoribulokinase/uridine kinase family protein O.I. H.G. S.X.
0.36 51.9 0.92 Ta.497.3.S1_x_at CA722566 - - 7e-8 At3g23660 transport protein, putative O.I. H.G. S.X.
0.04 5.8 0.88 Ta.30416.2.S1_a_at CA651932 - - 7e-11 At2g18700 ATTPS11 O.I. H.G. S.X.
0.04 5.8 0.90 TaAffx.85023.1.S1_at CA626261 - - 4e+0 At4g24740 AFC2 (ARABIDOPSIS FUS3-COMPLEMENTING GENE 2) O.I. H.G. S.X.
0.03 4.7 0.92 Ta.3083.2.A1_at BJ254365 - - 4e+0 At3g05602 unknown protein O.I. H.G. S.X.
0.01 2.4 0.92 Ta.3478.3.S1_x_at CA637826 - - 2e-11 At1g69670 CUL3B (CULLIN 3B) O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
30.4 99.8 GSM298070 Leaf tissue of Paragon at 9 weeks post germination, biological rep 2 GSE11774 Expression data from cold treated wheat cultivars
6.1 98.1 GSM298092 Crown tissue of Solstice at 3 weeks post germination GSE11774 Expression data from cold treated wheat cultivars
5.0 97.4 GSM250899 TcLr34_3dpi_mock_rep3 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
4.1 96.4 GSM298090 Leaf tissue of Solstice at 5 weeks post germination GSE11774 Expression data from cold treated wheat cultivars
3.8 96.0 GSM250895 Tc_3dpi_mock_rep3 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
3.4 95.2 GSM343682 Wheat var. Kennedy_control_rep2 GSE13660 Gene expression analysis of the wheat response to infection by Fusarium pseudograminearum
3.4 95.2 GSM343678 Wheat var. Kennedy_control_rep1 GSE13660 Gene expression analysis of the wheat response to infection by Fusarium pseudograminearum
3.3 95.0 GSM343688 Wheat var. Kennedy_Fp inoculated_rep3 GSE13660 Gene expression analysis of the wheat response to infection by Fusarium pseudograminearum
3.1 94.5 GSM250898 TcLr1_3dpi_inoculated_rep3 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
3.1 94.5 GSM343685 Wheat var. Kennedy_control_rep3 GSE13660 Gene expression analysis of the wheat response to infection by Fusarium pseudograminearum

Inter-species module comparison

A co-expression module including the rice gene, Os12g0601200, orthologous to the query gene, Ta.26624.1.A1_at

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.63 82.7 Os12g0601200 At1g03030 - Phosphoribulokinase/uridine kinase family protein 1e-14 At1g03030 phosphoribulokinase/uridine kinase family protein O.I. H.G. S.X.
0.40 51.1 Os07g0694800 At1g03030 - Protein of unknown function DUF155 family protein 3e-28 At5g13610 unknown protein O.I. H.G. S.X.
0.17 12.6 Os01g0360600 At1g03030 - Dephospho-CoA kinase family protein 4e-5 At2g27490 ATCOAE O.I. H.G. S.X.
0.15 10.3 Os12g0192500 At1g03030 - The start codon is not identified. 1e-6 At1g22940 TH1 (THIAMINE REQUIRING 1) O.I. H.G. S.X.
0.13 8.2 Os02g0127700 At1g03030 - Phosphoribosyl pyrophosphate synthase (EC 2.7.6.1) 1e-73 At2g44530 ribose-phosphate pyrophosphokinase, putative / phosphoribosyl diphosphate synthetase, putative O.I. H.G. S.X.
0.09 4.9 Os03g0170300 At1g03030 - 3-Dehydroquinate synthase family protein 3e-3 At3g28760 - O.I. H.G. S.X.
0.07 3.7 Os01g0958800 At1g03030 - Conserved hypothetical protein 7e-4 At3g11620 unknown protein O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Vitis_vinifera
Zea_mays

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