CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Ta.26624.1.A1_at

Gene name
Homology with Arabidopsis Similar to At1g03030: phosphoribulokinase/uridine kinase family protein (HF=2e-5)

Module size 6 genes

NF 0.04

%ile 10.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 98.2 0.68 Ta.26624.1.A1_at CD491395 - - 2e-5 At1g03030 phosphoribulokinase/uridine kinase family protein O.I. H.G. S.X.
0.36 51.9 0.92 Ta.497.3.S1_x_at CA722566 - - 7e-8 At3g23660 transport protein, putative O.I. H.G. S.X.
0.04 5.8 0.88 Ta.30416.2.S1_a_at CA651932 - - 7e-11 At2g18700 ATTPS11 O.I. H.G. S.X.
0.04 5.8 0.90 TaAffx.85023.1.S1_at CA626261 - - 4e+0 At4g24740 AFC2 (ARABIDOPSIS FUS3-COMPLEMENTING GENE 2) O.I. H.G. S.X.
0.03 4.7 0.92 Ta.3083.2.A1_at BJ254365 - - 4e+0 At3g05602 unknown protein O.I. H.G. S.X.
0.01 2.4 0.92 Ta.3478.3.S1_x_at CA637826 - - 2e-11 At1g69670 CUL3B (CULLIN 3B) O.I. H.G. S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.91	98.2	0.68	Ta.26624.1.A1_at	CD491395	-	-	2e-5	At1g03030	phosphoribulokinase/uridine kinase family protein	O.I.	H.G.	S.X.
0.36	51.9	0.92	Ta.497.3.S1_x_at	CA722566	-	-	7e-8	At3g23660	transport protein, putative	O.I.	H.G.	S.X.
0.04	5.8	0.88	Ta.30416.2.S1_a_at	CA651932	-	-	7e-11	At2g18700	ATTPS11	O.I.	H.G.	S.X.
0.04	5.8	0.90	TaAffx.85023.1.S1_at	CA626261	-	-	4e+0	At4g24740	AFC2 (ARABIDOPSIS FUS3-COMPLEMENTING GENE 2)	O.I.	H.G.	S.X.
0.03	4.7	0.92	Ta.3083.2.A1_at	BJ254365	-	-	4e+0	At3g05602	unknown protein	O.I.	H.G.	S.X.
0.01	2.4	0.92	Ta.3478.3.S1_x_at	CA637826	-	-	2e-11	At1g69670	CUL3B (CULLIN 3B)	O.I.	H.G.	S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
30.4 99.8 GSM298070 Leaf tissue of Paragon at 9 weeks post germination, biological rep 2 GSE11774 Expression data from cold treated wheat cultivars
6.1 98.1 GSM298092 Crown tissue of Solstice at 3 weeks post germination GSE11774 Expression data from cold treated wheat cultivars
5.0 97.4 GSM250899 TcLr34_3dpi_mock_rep3 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
4.1 96.4 GSM298090 Leaf tissue of Solstice at 5 weeks post germination GSE11774 Expression data from cold treated wheat cultivars
3.8 96.0 GSM250895 Tc_3dpi_mock_rep3 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
3.4 95.2 GSM343682 Wheat var. Kennedy_control_rep2 GSE13660 Gene expression analysis of the wheat response to infection by Fusarium pseudograminearum
3.4 95.2 GSM343678 Wheat var. Kennedy_control_rep1 GSE13660 Gene expression analysis of the wheat response to infection by Fusarium pseudograminearum
3.3 95.0 GSM343688 Wheat var. Kennedy_Fp inoculated_rep3 GSE13660 Gene expression analysis of the wheat response to infection by Fusarium pseudograminearum
3.1 94.5 GSM250898 TcLr1_3dpi_inoculated_rep3 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
3.1 94.5 GSM343685 Wheat var. Kennedy_control_rep3 GSE13660 Gene expression analysis of the wheat response to infection by Fusarium pseudograminearum

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title
30.4	99.8	GSM298070	Leaf tissue of Paragon at 9 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
6.1	98.1	GSM298092	Crown tissue of Solstice at 3 weeks post germination	GSE11774	Expression data from cold treated wheat cultivars
5.0	97.4	GSM250899	TcLr34_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
4.1	96.4	GSM298090	Leaf tissue of Solstice at 5 weeks post germination	GSE11774	Expression data from cold treated wheat cultivars
3.8	96.0	GSM250895	Tc_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
3.4	95.2	GSM343682	Wheat var. Kennedy_control_rep2	GSE13660	Gene expression analysis of the wheat response to infection by Fusarium pseudograminearum
3.4	95.2	GSM343678	Wheat var. Kennedy_control_rep1	GSE13660	Gene expression analysis of the wheat response to infection by Fusarium pseudograminearum
3.3	95.0	GSM343688	Wheat var. Kennedy_Fp inoculated_rep3	GSE13660	Gene expression analysis of the wheat response to infection by Fusarium pseudograminearum
3.1	94.5	GSM250898	TcLr1_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
3.1	94.5	GSM343685	Wheat var. Kennedy_control_rep3	GSE13660	Gene expression analysis of the wheat response to infection by Fusarium pseudograminearum

Inter-species module comparison

A co-expression module including the Arabidopsis gene, At1g03030, orthologous to the query gene, Ta.26624.1.A1_at

VF %ile Gene ID Repr. ID Gene Name Func. O.I. H.G. S.X. Other DB
1.00 100.0 At1g03030 839473 phosphoribulokinase/uridine kinase family protein F:kinase activity, phosphotransferase activity, alcohol group as acceptor, ATP binding;P:biosynthetic process;C:chloroplast;BOFMPA O.I. H.G. S.X.
0.45 58.3 At1g55090 841952 carbon-nitrogen hydrolase family protein F:hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, NAD+ synthase (glutamine-hydrolyzing) activity, ATP binding;P:nitrogen compound metabolic process, NAD biosynthetic process;C:cellular_component unknown;BOAMFP O.I. H.G. S.X.
0.41 52.4 At3g17880 821056 ATTDX (TETRATICOPEPTIDE DOMAIN-CONTAINING THIOREDOXIN) Encodes a thioredoxin-like disulfide reductase. The protein interacts with the yeast Hsp70 protein Ssb2 in vitro. This interaction is sensitive to the redox status of the thioredoxin domain of AtTDX. O.I. H.G. S.X.
0.39 48.4 At4g13360 826967 catalytic F:catalytic activity;P:metabolic process;C:unknown;BOMFPA O.I. H.G. S.X.
0.38 46.7 At1g14570 838019 UBX domain-containing protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPFOB O.I. H.G. S.X.
0.38 46.7 At1g16010 838171 magnesium transporter CorA-like family protein (MRS2-1) F:metal ion transmembrane transporter activity;P:metal ion transport;C:vacuole, membrane;PFOMBA O.I. H.G. S.X.
0.37 45.0 At5g65780 836707 ATBCAT-5 encodes a chloroplast branched-chain amino acid aminotransferase, can complement the yeast leu/iso-leu/val auxotrophy mutant O.I. H.G. S.X.
0.37 45.0 At4g36960 829850 RNA recognition motif (RRM)-containing protein F:RNA binding, nucleotide binding, nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;MPOFBA O.I. H.G. S.X.
0.36 43.6 At1g54390 841881 PHD finger protein-related ING2 encodes a member of the Inhibitor of Growth family of nuclear-localized PhD domain containing homeodomain proteins. Binds to H3K4 di or trimethylated DNA. O.I. H.G. S.X.
0.35 41.6 At2g28390 817387 SAND family protein F:unknown;P:unknown;C:chloroplast;MFOBPAV O.I. H.G. S.X.
0.35 41.6 At2g25740 817117 ATP-dependent protease La (LON) domain-containing protein F:ATP-dependent peptidase activity;P:N-terminal protein myristoylation, ATP-dependent proteolysis;C:cellular_component unknown;BOMPF O.I. H.G. S.X.
0.35 41.6 At4g36190 829776 serine-type peptidase F:serine-type peptidase activity;P:proteolysis;C:vacuole;MOFPB O.I. H.G. S.X.
0.34 39.8 At4g33650 829506 DRP3A (DYNAMIN-RELATED PROTEIN 3A) Encodes a protein with high sequence similarity to the dynamin superfamily. Among those members ADL2 was most closely related to Dnm1p of yeast and likely a member of the Vps1p subfamily. Widely expressed in various tissues with highest expression in flower tissues. Localizes to the chloroplast, mitochondrion and peroxisome. Involved in peroxisome and mitochondria fission in combination with DRP3B. O.I. H.G. S.X.
0.34 39.8 At4g32660 829401 AME3 Encodes protein kinase AME3. O.I. H.G. S.X.
0.33 38.1 At1g32260 840118 unknown protein F:molecular_function unknown;P:biological_process unknown;C:mitochondrion;P O.I. H.G. S.X.
0.33 38.1 At2g26140 817154 ftsh4 (FtsH protease 4) encodes an FtsH protease that is localized to the mitochondrion O.I. H.G. S.X.
0.33 38.1 At4g34270 829577 TIP41-like family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFOP O.I. H.G. S.X.
0.32 35.7 At3g05530 819718 RPT5A (REGULATORY PARTICLE TRIPLE-A ATPASE 5A) Encodes RPT5a (Regulatory Particle 5a), one of the six AAA-ATPases of the proteasome regulatory particle. Essential for gametophyte development. In Arabidopsis, the RPT5 subunit is encoded by two highly homologous genes, RPT5a and RPT5b. RPT5a and RPT5b show accession-dependent functional redundancy. In Wassilewskija (Ws) accession: mutant alleles of RPT5a displayed 50% pollen lethality, indicating that RPT5a is essential for male gametophyte development. In the Columbia (Col) accession, a rpt5a mutant allele did not display such a phenotype because the RPT5b Col allele complements the rpt5a defect in the male gametophyte, whereas the RPT5b Ws allele does not. Double rpt5a rpt5b mutants in Col background showed a complete male and female gametophyte lethal phenotype. O.I. H.G. S.X.
0.32 35.7 At3g59990 825169 MAP2B (METHIONINE AMINOPEPTIDASE 2B) Encodes a MAP2 like methionine aminopeptidase O.I. H.G. S.X.
0.31 33.8 At5g62650 836386 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. H.G. S.X.
0.31 33.8 At3g52850 824451 VSR1 (VACUOLAR SORTING RECEPTOR HOMOLOG 1) Encodes the Vacuolar Sorting Receptor-1 (VSR-1)/Epidermal Growth Factor Receptor-like protein1(VSR-1/ATELP1). Binds vacuolar targeting signals. Involved in sorting seed storage proteins into vacuoles. O.I. H.G. S.X.
0.31 33.8 At3g06540 819832 GDP dissociation inhibitor family protein / Rab GTPase activator family protein F:RAB GDP-dissociation inhibitor activity;P:intracellular protein transport, regulation of GTPase activity, protein transport;C:cellular_component unknown;MFOPB O.I. H.G. S.X.
0.31 33.8 At3g06960 819881 PDE320 (PIGMENT DEFECTIVE 320) F:molecular_function unknown;P:acylglycerol transport;C:endoplasmic reticulum, chloroplast;P O.I. H.G. S.X.
0.31 33.8 At3g22990 821873 LFR (LEAF AND FLOWER RELATED) Armadillo-repeat containing protein. Involved in leaf and flower development. Located in nucleus. Broadly expressed throughout vegetative and floral tissues. O.I. H.G. S.X.
0.31 33.8 At3g51310 824294 VPS35C (VPS35 HOMOLOG C) Homolog of yeast retromer subunit VPS35. Part of a retromer-like protein complex involved in endosome to lysosome protein transport. O.I. H.G. S.X.
0.30 32.1 At4g09340 826516 SPla/RYanodine receptor (SPRY) domain-containing protein F:unknown;P:unknown;C:cellular_component unknown;MFOP O.I. H.G. S.X.
0.30 32.1 At5g57950 835906 26S proteasome regulatory subunit, putative F:protein binding;P:intracellular signaling cascade;C:proteasome regulatory particle;MOFBP O.I. H.G. S.X.
0.30 32.1 At1g70570 843394 anthranilate phosphoribosyltransferase, putative F:anthranilate phosphoribosyltransferase activity, transferase activity, transferring glycosyl groups;P:tryptophan biosynthetic process, metabolic process;C:chloroplast;BOAP O.I. H.G. S.X.
0.30 32.1 At5g64960 836620 CDKC2 (Cyclin dependent kinase group C 2) Encodes CDKC;2, part of a CDKC kinase complex that is targeted by Cauliflower mosaic virus (CaMV) for transcriptional activation of viral genes. Also regulates plant growth and development. Co-localizes with spliceosomal components in a manner dependent on the transcriptional status of the cells and on CDKC2-kinase activity. Expression of CDKC2 modifies the location of spliceosomal components. O.I. H.G. S.X.
0.30 32.1 At3g05090 819671 transducin family protein / WD-40 repeat family protein F:nucleotide binding;P:biological_process unknown;C:CUL4 RING ubiquitin ligase complex;MFOBPAV O.I. H.G. S.X.
0.30 32.1 At2g21270 816666 ubiquitin fusion degradation UFD1 family protein F:molecular_function unknown;P:ubiquitin-dependent protein catabolic process;C:unknown;OFMPAB O.I. H.G. S.X.
0.30 32.1 At5g28850 833004 calcium-binding EF hand family protein F:calcium ion binding;P:biological_process unknown;C:endomembrane system;MOPF O.I. H.G. S.X.
0.29 30.3 At4g29490 829070 aminopeptidase/ manganese ion binding F:manganese ion binding, aminopeptidase activity;P:cellular process;C:chloroplast;BOMFAP O.I. H.G. S.X.
0.29 30.3 At1g25420 839128 unknown protein F:unknown;P:biological_process unknown;C:unknown;PMFO O.I. H.G. S.X.
0.29 30.3 At2g18250 816341 ATCOAD (4-phosphopantetheine adenylyltransferase) At2g18250 encodes pantetheine-phosphate adenylyltransferase catalyzing the formation of dephospho-CoA from pantetheine 4'-phosphate. The enzyme is involved in coenzyme A biosynthesis. O.I. H.G. S.X.
0.28 30.3 At1g06200 837129 serine-type peptidase F:serine-type peptidase activity;P:proteolysis;C:membrane;PMFOB O.I. H.G. S.X.
0.28 30.3 At1g61150 842408 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFPO O.I. H.G. S.X.
0.28 30.3 At1g76850 844020 SEC5A (EXOCYST COMPLEX COMPONENT SEC5) F:molecular_function unknown;P:pollen germination, pollen tube growth;C:cytosol, plasma membrane;MFPOVB O.I. H.G. S.X.
0.28 30.3 At3g54480 824613 SKIP5 (SKP1/ASK-INTERACTING PROTEIN 5) Encodes an SKP1 interacting partner (SKIP5). O.I. H.G. S.X.
0.27 26.2 At2g29080 817456 ftsh3 (FtsH protease 3) encodes an FtsH protease that is localized to the mitochondrion O.I. H.G. S.X.
0.27 26.2 At1g79230 844264 MST1 (MERCAPTOPYRUVATE SULFURTRANSFERASE 1) encodes a sulfurtransferase/rhodaneses, which belongs to a group of enzymes widely distributed in all three phyla that catalyze the transfer of sulfur from a donor to a thiophilic acceptor substrate. The protein and transcript levels are NOT affected by senescence or exogenous cyanide, suggesting that sulfurtransferases are involved in cyanide detoxification. O.I. H.G. S.X.
0.27 26.2 At3g13670 820572 protein kinase family protein F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:unknown;MBOPFVA O.I. H.G. S.X.
0.26 24.4 At3g06940 3768779 transposable element gene F:unknown;P:unknown;C:unknown O.I. H.G. S.X.
0.26 24.4 At3g06580 819837 GALK Encodes a protein with galactose kinase activity. The gene was shown to complement the yeast Δgal1 mutant defective in the galactokinase gene GAL1. O.I. H.G. S.X.
0.26 24.4 At5g64830 836606 programmed cell death 2 C-terminal domain-containing protein F:molecular_function unknown;P:apoptosis;C:cytoplasm;MFOP O.I. H.G. S.X.
0.26 24.4 At2g25760 817118 protein kinase family protein F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:unknown;MBOPFVA O.I. H.G. S.X.
0.26 24.4 At3g03740 821170 ATBPM4 (BTB-POZ and MATH domain 4) F:protein binding;P:biological_process unknown;C:unknown;MPOFV O.I. H.G. S.X.
0.25 22.6 At3g20970 821647 NFU4 Encodes a protein containing the NFU domain that may be involved in iron-sulfur cluster assembly. Part of a five member gene family, more closely related to NFU5 than to NFU1,2, and 3. Targeted to the mitochondrion. O.I. H.G. S.X.
0.25 22.6 At4g00170 828017 vesicle-associated membrane family protein / VAMP family protein F:structural molecule activity;P:biological_process unknown;C:cellular_component unknown;MPFO O.I. H.G. S.X.
0.25 22.6 At2g05230 815071 DNAJ heat shock N-terminal domain-containing protein F:heat shock protein binding;P:protein folding;C:cellular_component unknown;BOMPFAV O.I. H.G. S.X.
0.24 20.7 At5g61140 836235 DEAD box RNA helicase, putative Encodes a predicted protein with 30% identity with MER3/RCK. O.I. H.G. S.X.
0.24 20.7 At1g14510 838013 AL7 (ALFIN-LIKE 7) AL7 encodes a member of the Alfin-Like family of nuclear-localized PhD domain containing homeodomain proteins. Binds to H3K4 di or trimethylated DNA. O.I. H.G. S.X.
0.23 19.3 At4g15475 827219 F-box family protein (FBL4) F:ubiquitin-protein ligase activity;P:ubiquitin-dependent protein catabolic process;C:unknown;MPOFBV O.I. H.G. S.X.
0.23 19.3 At3g50880 824252 HhH-GPD base excision DNA repair family protein F:catalytic activity;P:DNA repair, base-excision repair;C:chloroplast;OBFPA O.I. H.G. S.X.
0.23 19.3 At1g06110 837120 SKIP16 (SKP1/ASK-interacting protein 16) F:protein binding;P:biological_process unknown;C:SCF ubiquitin ligase complex;BOMPF O.I. H.G. S.X.
0.23 19.3 At5g51340 835208 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOB O.I. H.G. S.X.
0.22 17.5 At5g06120 830499 Ran-binding protein, putative F:protein transporter activity, binding;P:intracellular protein transport, protein import into nucleus, docking;C:nucleus, nuclear pore, cytoplasm;MOP O.I. H.G. S.X.
0.22 17.5 At4g30890 829213 UBP24 (UBIQUITIN-SPECIFIC PROTEASE 24) Encodes a ubiquitin-specific protease. O.I. H.G. S.X.
0.22 17.5 At5g58490 835962 cinnamoyl-CoA reductase family F:3-beta-hydroxy-delta5-steroid dehydrogenase activity, binding, cinnamoyl-CoA reductase activity, catalytic activity;P:lignin biosynthetic process, steroid biosynthetic process, metabolic process;C:cellular_component unknown;BOPFMAV O.I. H.G. S.X.
0.22 17.5 At5g18190 831937 protein kinase family protein F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cellular_component unknown;MBOPFVA O.I. H.G. S.X.
0.22 17.5 At1g65410 842852 ATNAP11 (ARABIDOPSIS THALIANA NON-INTRINSIC ABC PROTEIN 11) member of NAP subfamily O.I. H.G. S.X.
0.22 17.5 At4g24550 828557 clathrin adaptor complexes medium subunit family protein F:protein binding;P:intracellular protein transport, transport, vesicle-mediated transport;C:membrane coat, clathrin vesicle coat, clathrin adaptor complex;MFOP O.I. H.G. S.X.
0.21 15.8 At2g44100 819016 ATGDI1 (ARABIDOPSIS THALIANA GUANOSINE NUCLEOTIDE DIPHOSPHATE DISSOCIATION INHIBITOR 1) GDP dissociation inhibitor involved in vesicular membrane traffic O.I. H.G. S.X.
0.21 15.8 At2g03690 814897 coenzyme Q biosynthesis Coq4 family protein / ubiquinone biosynthesis Coq4 family protein Ubiquinone biosynthesis protein COQ4 homolog. O.I. H.G. S.X.
0.21 15.8 At1g13320 837892 PP2AA3 (PROTEIN PHOSPHATASE 2A SUBUNIT A3) one of three genes encoding the 65 kDa regulatory subunit of protein phosphatase 2A (PP2A) O.I. H.G. S.X.
0.19 12.7 At3g07565 819946 DNA binding F:DNA binding;P:biological_process unknown;C:chloroplast;PMO O.I. H.G. S.X.
0.18 11.4 At5g27540 832814 MIRO1 (Miro-related GTP-ase 1) Encodes a protein with similarity to GTPases that is localized to the mitochondrion. Involved in embryogenesis, pollen tube growth and required for mitochondrial development. O.I. H.G. S.X.
0.18 11.4 At2g27600 817306 SKD1 (SUPPRESSOR OF K+ TRANSPORT GROWTH DEFECT1) Encodes a SKD1 (Suppressor of K+ Transport Growth Defect1) homolog. Localized to the cytoplasm and to multivesicular endosomes. Involved in multivesicular endosome function. O.I. H.G. S.X.
0.17 10.2 At5g53540 835436 MSP1 protein, putative / intramitochondrial sorting protein, putative F:in 6 functions;P:proteolysis;C:endomembrane system;BOMFPAV O.I. H.G. S.X.
0.15 7.8 At4g19210 827661 ATRLI2 member of RLI subfamily O.I. H.G. S.X.
0.14 6.8 At3g01360 821158 unknown protein F:molecular_function unknown;P:unknown;C:unknown;PO O.I. H.G. S.X.
0.13 5.8 At1g20770 838667 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPF O.I. H.G. S.X.
0.13 5.8 At4g32930 829430 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFPO O.I. H.G. S.X.
0.12 4.9 At3g10920 820263 MSD1 (MANGANESE SUPEROXIDE DISMUTASE 1) manganese superoxide dismutase (MSD1) O.I. H.G. S.X.
0.12 4.9 At5g41210 834123 ATGSTT1 (GLUTATHIONE S-TRANSFERASE THETA 1) Encodes glutathione transferase belonging to the theta class of GSTs. Naming convention according to Wagner et al. (2002). O.I. H.G. S.X.

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	O.I.	H.G.	S.X.
1.00	100.0	At1g03030	839473	phosphoribulokinase/uridine kinase family protein	F:kinase activity, phosphotransferase activity, alcohol group as acceptor, ATP binding;P:biosynthetic process;C:chloroplast;BOFMPA	O.I.	H.G.	S.X.
0.45	58.3	At1g55090	841952	carbon-nitrogen hydrolase family protein	F:hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, NAD+ synthase (glutamine-hydrolyzing) activity, ATP binding;P:nitrogen compound metabolic process, NAD biosynthetic process;C:cellular_component unknown;BOAMFP	O.I.	H.G.	S.X.
0.41	52.4	At3g17880	821056	ATTDX (TETRATICOPEPTIDE DOMAIN-CONTAINING THIOREDOXIN)	Encodes a thioredoxin-like disulfide reductase. The protein interacts with the yeast Hsp70 protein Ssb2 in vitro. This interaction is sensitive to the redox status of the thioredoxin domain of AtTDX.	O.I.	H.G.	S.X.
0.39	48.4	At4g13360	826967	catalytic	F:catalytic activity;P:metabolic process;C:unknown;BOMFPA	O.I.	H.G.	S.X.
0.38	46.7	At1g14570	838019	UBX domain-containing protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPFOB	O.I.	H.G.	S.X.
0.38	46.7	At1g16010	838171	magnesium transporter CorA-like family protein (MRS2-1)	F:metal ion transmembrane transporter activity;P:metal ion transport;C:vacuole, membrane;PFOMBA	O.I.	H.G.	S.X.
0.37	45.0	At5g65780	836707	ATBCAT-5	encodes a chloroplast branched-chain amino acid aminotransferase, can complement the yeast leu/iso-leu/val auxotrophy mutant	O.I.	H.G.	S.X.
0.37	45.0	At4g36960	829850	RNA recognition motif (RRM)-containing protein	F:RNA binding, nucleotide binding, nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;MPOFBA	O.I.	H.G.	S.X.
0.36	43.6	At1g54390	841881	PHD finger protein-related	ING2 encodes a member of the Inhibitor of Growth family of nuclear-localized PhD domain containing homeodomain proteins. Binds to H3K4 di or trimethylated DNA.	O.I.	H.G.	S.X.
0.35	41.6	At2g28390	817387	SAND family protein	F:unknown;P:unknown;C:chloroplast;MFOBPAV	O.I.	H.G.	S.X.
0.35	41.6	At2g25740	817117	ATP-dependent protease La (LON) domain-containing protein	F:ATP-dependent peptidase activity;P:N-terminal protein myristoylation, ATP-dependent proteolysis;C:cellular_component unknown;BOMPF	O.I.	H.G.	S.X.
0.35	41.6	At4g36190	829776	serine-type peptidase	F:serine-type peptidase activity;P:proteolysis;C:vacuole;MOFPB	O.I.	H.G.	S.X.
0.34	39.8	At4g33650	829506	DRP3A (DYNAMIN-RELATED PROTEIN 3A)	Encodes a protein with high sequence similarity to the dynamin superfamily. Among those members ADL2 was most closely related to Dnm1p of yeast and likely a member of the Vps1p subfamily. Widely expressed in various tissues with highest expression in flower tissues. Localizes to the chloroplast, mitochondrion and peroxisome. Involved in peroxisome and mitochondria fission in combination with DRP3B.	O.I.	H.G.	S.X.
0.34	39.8	At4g32660	829401	AME3	Encodes protein kinase AME3.	O.I.	H.G.	S.X.
0.33	38.1	At1g32260	840118	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:mitochondrion;P	O.I.	H.G.	S.X.
0.33	38.1	At2g26140	817154	ftsh4 (FtsH protease 4)	encodes an FtsH protease that is localized to the mitochondrion	O.I.	H.G.	S.X.
0.33	38.1	At4g34270	829577	TIP41-like family protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFOP	O.I.	H.G.	S.X.
0.32	35.7	At3g05530	819718	RPT5A (REGULATORY PARTICLE TRIPLE-A ATPASE 5A)	Encodes RPT5a (Regulatory Particle 5a), one of the six AAA-ATPases of the proteasome regulatory particle. Essential for gametophyte development. In Arabidopsis, the RPT5 subunit is encoded by two highly homologous genes, RPT5a and RPT5b. RPT5a and RPT5b show accession-dependent functional redundancy. In Wassilewskija (Ws) accession: mutant alleles of RPT5a displayed 50% pollen lethality, indicating that RPT5a is essential for male gametophyte development. In the Columbia (Col) accession, a rpt5a mutant allele did not display such a phenotype because the RPT5b Col allele complements the rpt5a defect in the male gametophyte, whereas the RPT5b Ws allele does not. Double rpt5a rpt5b mutants in Col background showed a complete male and female gametophyte lethal phenotype.	O.I.	H.G.	S.X.
0.32	35.7	At3g59990	825169	MAP2B (METHIONINE AMINOPEPTIDASE 2B)	Encodes a MAP2 like methionine aminopeptidase	O.I.	H.G.	S.X.
0.31	33.8	At5g62650	836386	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	H.G.	S.X.
0.31	33.8	At3g52850	824451	VSR1 (VACUOLAR SORTING RECEPTOR HOMOLOG 1)	Encodes the Vacuolar Sorting Receptor-1 (VSR-1)/Epidermal Growth Factor Receptor-like protein1(VSR-1/ATELP1). Binds vacuolar targeting signals. Involved in sorting seed storage proteins into vacuoles.	O.I.	H.G.	S.X.
0.31	33.8	At3g06540	819832	GDP dissociation inhibitor family protein / Rab GTPase activator family protein	F:RAB GDP-dissociation inhibitor activity;P:intracellular protein transport, regulation of GTPase activity, protein transport;C:cellular_component unknown;MFOPB	O.I.	H.G.	S.X.
0.31	33.8	At3g06960	819881	PDE320 (PIGMENT DEFECTIVE 320)	F:molecular_function unknown;P:acylglycerol transport;C:endoplasmic reticulum, chloroplast;P	O.I.	H.G.	S.X.
0.31	33.8	At3g22990	821873	LFR (LEAF AND FLOWER RELATED)	Armadillo-repeat containing protein. Involved in leaf and flower development. Located in nucleus. Broadly expressed throughout vegetative and floral tissues.	O.I.	H.G.	S.X.
0.31	33.8	At3g51310	824294	VPS35C (VPS35 HOMOLOG C)	Homolog of yeast retromer subunit VPS35. Part of a retromer-like protein complex involved in endosome to lysosome protein transport.	O.I.	H.G.	S.X.
0.30	32.1	At4g09340	826516	SPla/RYanodine receptor (SPRY) domain-containing protein	F:unknown;P:unknown;C:cellular_component unknown;MFOP	O.I.	H.G.	S.X.
0.30	32.1	At5g57950	835906	26S proteasome regulatory subunit, putative	F:protein binding;P:intracellular signaling cascade;C:proteasome regulatory particle;MOFBP	O.I.	H.G.	S.X.
0.30	32.1	At1g70570	843394	anthranilate phosphoribosyltransferase, putative	F:anthranilate phosphoribosyltransferase activity, transferase activity, transferring glycosyl groups;P:tryptophan biosynthetic process, metabolic process;C:chloroplast;BOAP	O.I.	H.G.	S.X.
0.30	32.1	At5g64960	836620	CDKC2 (Cyclin dependent kinase group C 2)	Encodes CDKC;2, part of a CDKC kinase complex that is targeted by Cauliflower mosaic virus (CaMV) for transcriptional activation of viral genes. Also regulates plant growth and development. Co-localizes with spliceosomal components in a manner dependent on the transcriptional status of the cells and on CDKC2-kinase activity. Expression of CDKC2 modifies the location of spliceosomal components.	O.I.	H.G.	S.X.
0.30	32.1	At3g05090	819671	transducin family protein / WD-40 repeat family protein	F:nucleotide binding;P:biological_process unknown;C:CUL4 RING ubiquitin ligase complex;MFOBPAV	O.I.	H.G.	S.X.
0.30	32.1	At2g21270	816666	ubiquitin fusion degradation UFD1 family protein	F:molecular_function unknown;P:ubiquitin-dependent protein catabolic process;C:unknown;OFMPAB	O.I.	H.G.	S.X.
0.30	32.1	At5g28850	833004	calcium-binding EF hand family protein	F:calcium ion binding;P:biological_process unknown;C:endomembrane system;MOPF	O.I.	H.G.	S.X.
0.29	30.3	At4g29490	829070	aminopeptidase/ manganese ion binding	F:manganese ion binding, aminopeptidase activity;P:cellular process;C:chloroplast;BOMFAP	O.I.	H.G.	S.X.
0.29	30.3	At1g25420	839128	unknown protein	F:unknown;P:biological_process unknown;C:unknown;PMFO	O.I.	H.G.	S.X.
0.29	30.3	At2g18250	816341	ATCOAD (4-phosphopantetheine adenylyltransferase)	At2g18250 encodes pantetheine-phosphate adenylyltransferase catalyzing the formation of dephospho-CoA from pantetheine 4'-phosphate. The enzyme is involved in coenzyme A biosynthesis.	O.I.	H.G.	S.X.
0.28	30.3	At1g06200	837129	serine-type peptidase	F:serine-type peptidase activity;P:proteolysis;C:membrane;PMFOB	O.I.	H.G.	S.X.
0.28	30.3	At1g61150	842408	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFPO	O.I.	H.G.	S.X.
0.28	30.3	At1g76850	844020	SEC5A (EXOCYST COMPLEX COMPONENT SEC5)	F:molecular_function unknown;P:pollen germination, pollen tube growth;C:cytosol, plasma membrane;MFPOVB	O.I.	H.G.	S.X.
0.28	30.3	At3g54480	824613	SKIP5 (SKP1/ASK-INTERACTING PROTEIN 5)	Encodes an SKP1 interacting partner (SKIP5).	O.I.	H.G.	S.X.
0.27	26.2	At2g29080	817456	ftsh3 (FtsH protease 3)	encodes an FtsH protease that is localized to the mitochondrion	O.I.	H.G.	S.X.
0.27	26.2	At1g79230	844264	MST1 (MERCAPTOPYRUVATE SULFURTRANSFERASE 1)	encodes a sulfurtransferase/rhodaneses, which belongs to a group of enzymes widely distributed in all three phyla that catalyze the transfer of sulfur from a donor to a thiophilic acceptor substrate. The protein and transcript levels are NOT affected by senescence or exogenous cyanide, suggesting that sulfurtransferases are involved in cyanide detoxification.	O.I.	H.G.	S.X.
0.27	26.2	At3g13670	820572	protein kinase family protein	F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:unknown;MBOPFVA	O.I.	H.G.	S.X.
0.26	24.4	At3g06940	3768779	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	H.G.	S.X.
0.26	24.4	At3g06580	819837	GALK	Encodes a protein with galactose kinase activity. The gene was shown to complement the yeast Δgal1 mutant defective in the galactokinase gene GAL1.	O.I.	H.G.	S.X.
0.26	24.4	At5g64830	836606	programmed cell death 2 C-terminal domain-containing protein	F:molecular_function unknown;P:apoptosis;C:cytoplasm;MFOP	O.I.	H.G.	S.X.
0.26	24.4	At2g25760	817118	protein kinase family protein	F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:unknown;MBOPFVA	O.I.	H.G.	S.X.
0.26	24.4	At3g03740	821170	ATBPM4 (BTB-POZ and MATH domain 4)	F:protein binding;P:biological_process unknown;C:unknown;MPOFV	O.I.	H.G.	S.X.
0.25	22.6	At3g20970	821647	NFU4	Encodes a protein containing the NFU domain that may be involved in iron-sulfur cluster assembly. Part of a five member gene family, more closely related to NFU5 than to NFU1,2, and 3. Targeted to the mitochondrion.	O.I.	H.G.	S.X.
0.25	22.6	At4g00170	828017	vesicle-associated membrane family protein / VAMP family protein	F:structural molecule activity;P:biological_process unknown;C:cellular_component unknown;MPFO	O.I.	H.G.	S.X.
0.25	22.6	At2g05230	815071	DNAJ heat shock N-terminal domain-containing protein	F:heat shock protein binding;P:protein folding;C:cellular_component unknown;BOMPFAV	O.I.	H.G.	S.X.
0.24	20.7	At5g61140	836235	DEAD box RNA helicase, putative	Encodes a predicted protein with 30% identity with MER3/RCK.	O.I.	H.G.	S.X.
0.24	20.7	At1g14510	838013	AL7 (ALFIN-LIKE 7)	AL7 encodes a member of the Alfin-Like family of nuclear-localized PhD domain containing homeodomain proteins. Binds to H3K4 di or trimethylated DNA.	O.I.	H.G.	S.X.
0.23	19.3	At4g15475	827219	F-box family protein (FBL4)	F:ubiquitin-protein ligase activity;P:ubiquitin-dependent protein catabolic process;C:unknown;MPOFBV	O.I.	H.G.	S.X.
0.23	19.3	At3g50880	824252	HhH-GPD base excision DNA repair family protein	F:catalytic activity;P:DNA repair, base-excision repair;C:chloroplast;OBFPA	O.I.	H.G.	S.X.
0.23	19.3	At1g06110	837120	SKIP16 (SKP1/ASK-interacting protein 16)	F:protein binding;P:biological_process unknown;C:SCF ubiquitin ligase complex;BOMPF	O.I.	H.G.	S.X.
0.23	19.3	At5g51340	835208	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOB	O.I.	H.G.	S.X.
0.22	17.5	At5g06120	830499	Ran-binding protein, putative	F:protein transporter activity, binding;P:intracellular protein transport, protein import into nucleus, docking;C:nucleus, nuclear pore, cytoplasm;MOP	O.I.	H.G.	S.X.
0.22	17.5	At4g30890	829213	UBP24 (UBIQUITIN-SPECIFIC PROTEASE 24)	Encodes a ubiquitin-specific protease.	O.I.	H.G.	S.X.
0.22	17.5	At5g58490	835962	cinnamoyl-CoA reductase family	F:3-beta-hydroxy-delta5-steroid dehydrogenase activity, binding, cinnamoyl-CoA reductase activity, catalytic activity;P:lignin biosynthetic process, steroid biosynthetic process, metabolic process;C:cellular_component unknown;BOPFMAV	O.I.	H.G.	S.X.
0.22	17.5	At5g18190	831937	protein kinase family protein	F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cellular_component unknown;MBOPFVA	O.I.	H.G.	S.X.
0.22	17.5	At1g65410	842852	ATNAP11 (ARABIDOPSIS THALIANA NON-INTRINSIC ABC PROTEIN 11)	member of NAP subfamily	O.I.	H.G.	S.X.
0.22	17.5	At4g24550	828557	clathrin adaptor complexes medium subunit family protein	F:protein binding;P:intracellular protein transport, transport, vesicle-mediated transport;C:membrane coat, clathrin vesicle coat, clathrin adaptor complex;MFOP	O.I.	H.G.	S.X.
0.21	15.8	At2g44100	819016	ATGDI1 (ARABIDOPSIS THALIANA GUANOSINE NUCLEOTIDE DIPHOSPHATE DISSOCIATION INHIBITOR 1)	GDP dissociation inhibitor involved in vesicular membrane traffic	O.I.	H.G.	S.X.
0.21	15.8	At2g03690	814897	coenzyme Q biosynthesis Coq4 family protein / ubiquinone biosynthesis Coq4 family protein	Ubiquinone biosynthesis protein COQ4 homolog.	O.I.	H.G.	S.X.
0.21	15.8	At1g13320	837892	PP2AA3 (PROTEIN PHOSPHATASE 2A SUBUNIT A3)	one of three genes encoding the 65 kDa regulatory subunit of protein phosphatase 2A (PP2A)	O.I.	H.G.	S.X.
0.19	12.7	At3g07565	819946	DNA binding	F:DNA binding;P:biological_process unknown;C:chloroplast;PMO	O.I.	H.G.	S.X.
0.18	11.4	At5g27540	832814	MIRO1 (Miro-related GTP-ase 1)	Encodes a protein with similarity to GTPases that is localized to the mitochondrion. Involved in embryogenesis, pollen tube growth and required for mitochondrial development.	O.I.	H.G.	S.X.
0.18	11.4	At2g27600	817306	SKD1 (SUPPRESSOR OF K+ TRANSPORT GROWTH DEFECT1)	Encodes a SKD1 (Suppressor of K+ Transport Growth Defect1) homolog. Localized to the cytoplasm and to multivesicular endosomes. Involved in multivesicular endosome function.	O.I.	H.G.	S.X.
0.17	10.2	At5g53540	835436	MSP1 protein, putative / intramitochondrial sorting protein, putative	F:in 6 functions;P:proteolysis;C:endomembrane system;BOMFPAV	O.I.	H.G.	S.X.
0.15	7.8	At4g19210	827661	ATRLI2	member of RLI subfamily	O.I.	H.G.	S.X.
0.14	6.8	At3g01360	821158	unknown protein	F:molecular_function unknown;P:unknown;C:unknown;PO	O.I.	H.G.	S.X.
0.13	5.8	At1g20770	838667	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPF	O.I.	H.G.	S.X.
0.13	5.8	At4g32930	829430	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFPO	O.I.	H.G.	S.X.
0.12	4.9	At3g10920	820263	MSD1 (MANGANESE SUPEROXIDE DISMUTASE 1)	manganese superoxide dismutase (MSD1)	O.I.	H.G.	S.X.
0.12	4.9	At5g41210	834123	ATGSTT1 (GLUTATHIONE S-TRANSFERASE THETA 1)	Encodes glutathione transferase belonging to the theta class of GSTs. Naming convention according to Wagner et al. (2002).	O.I.	H.G.	S.X.

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Vitis_vinifera
Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage

Gene ID	Ta.26624.1.A1_at
Gene name
Homology with Arabidopsis	Similar to At1g03030: phosphoribulokinase/uridine kinase family protein (HF=2e-5)
Module size	6 genes
NF	0.04
%ile	10.7

Co-expression analysis

Gene ID Ta.26624.1.A1_at Gene name Homology with ArabidopsisSimilar to At1g03030: phosphoribulokinase/uridine kinase family protein (HF=2e-5) Module size 6 genes NF 0.04 %ile 10.7

Co-expressed genes

Click More genes

Specific experiments for the module

Inter-species module comparison

Select a plant to compare co-expressed genes between species.Glycine_maxHordeum_vulgareOryza_sativaPopulus_trichocarpaVitis_viniferaZea_mays

Gene ID Ta.26624.1.A1_at

Gene name
Homology with Arabidopsis Similar to At1g03030: phosphoribulokinase/uridine kinase family protein (HF=2e-5)

Module size 6 genes

NF 0.04

%ile 10.7

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Vitis_vinifera
Zea_mays