Co-expression analysis

Gene ID	Ta.26378.1.A1_s_at
Gene name
Homology with Arabidopsis	Similar to At2g18530: protein kinase family protein (HF=2e+0)
Module size	6 genes
NF	0.46
%ile	72.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.44	64.5	0.95	Ta.26378.1.A1_s_at	CD490910	-	-	2e+0	At2g18530	protein kinase family protein	O.I.	H.G.	S.X.	Please select
0.50	72.4	0.95	Ta.12685.1.S1_at	CA722001	-	-	1e-1	At2g28930	APK1B	O.I.	H.G.	S.X.	Please select
0.50	72.4	0.95	Ta.12685.1.S1_x_at	CA722001	-	-	1e-1	At2g28930	APK1B	O.I.	H.G.	S.X.	Please select
0.44	64.5	0.95	Ta.25619.2.S1_a_at	CA609960	-	-	1e+0	At2g14160	nucleic acid binding / nucleotide binding	O.I.	H.G.	S.X.	Please select
0.40	58.4	0.95	TaAffx.129082.1.S1_x_at	CK154420	-	-	3e-6	At5g64460	-	O.I.	H.G.	S.X.	Please select
0.29	39.2	0.95	Ta.3909.1.A1_x_at	BJ274929	-	-	8e-1	At3g01400	armadillo/beta-catenin repeat family protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
11.7	99.3	GSM139933	Anther mature anthers rep3	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
11.6	99.3	GSM139932	Anther mature anthers rep2	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
10.6	99.2	GSM139931	Anther maturea nthers rep1	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
10.5	99.2	GSM314278	tissue type: anthers, before anthesis - rep1	GSE12508	Transcription patterns during wheat development
10.4	99.2	GSM314280	tissue type: anthers, before anthesis - rep3	GSE12508	Transcription patterns during wheat development
10.0	99.1	GSM314279	tissue type: anthers, before anthesis - rep2	GSE12508	Transcription patterns during wheat development
7.4	98.6	GSM250900	TcLr34_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
7.4	98.6	GSM298070	Leaf tissue of Paragon at 9 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
6.0	98.0	GSM250898	TcLr1_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
5.6	97.8	GSM298091	Leaf tissue of Solstice at 9 weeks post germination	GSE11774	Expression data from cold treated wheat cultivars

Inter-species module comparison

A co-expression module including the rice gene, Os10g0123400, orthologous to the query gene, Ta.26378.1.A1_s_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.9	Os10g0123400	At2g18530	-	-	2e+0	At5g38270	F-box family protein	O.I.	H.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.56	76.3	Os03g0385100	At2g18530	-	Plant lipid transfer/seed storage/trypsin-alphaamylase inhibitor domain containing protein	4e+0	At5g13290	CRN (CORYNE)	O.I.	H.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.50	68.0	Os07g0248200	At2g18530	-	-	9e-1	At4g32340	-	O.I.	H.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.50	68.0	Os04g0187000	At2g18530	-	-	1e+0	At3g29633	unknown protein	O.I.	H.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.44	58.1	Os02g0474501	At2g18530	-	-	1e-1	At1g53625	unknown protein	O.I.	H.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.25	24.1	Os09g0356700	At2g18530	-	-	6e-1	At4g21610	LOL2 (LSD ONE LIKE 2)	O.I.	H.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Populus_trichocarpa

Vitis_vinifera

Zea_mays

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