Co-expression analysis

Gene ID	Ta.26251.1.S1_at
Gene name
Homology with Arabidopsis	Similar to At4g09153: LCR36 (Low-molecular-weight cysteine-rich 36) (HF=4e-1)
Module size	6 genes
NF	0.02
%ile	6.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.2	0.87	Ta.26251.1.S1_at	CD491705	-	-	4e-1	At4g09153	LCR36 (Low-molecular-weight cysteine-rich 36)	O.I.	H.G.	S.X.	Please select
0.09	10.4	0.95	Ta.4999.1.S1_at	BJ270254	-	-	8e+0	At5g22440	60S ribosomal protein L10A (RPL10aC)	O.I.	H.G.	S.X.	Please select
0.06	7.6	0.93	TaAffx.37589.1.A1_at	BJ272379	-	-	4e+0	At5g53895	unknown protein	O.I.	H.G.	S.X.	Please select
0.03	4.7	0.95	TaAffx.92721.1.A1_at	BJ250943	-	-	1e+0	At4g27990	YGGT family protein	O.I.	H.G.	S.X.	Please select
0.03	4.7	0.95	Ta.12116.1.A1_at	BQ171628	-	-	1e+0	At2g18240	RER1 protein, putative	O.I.	H.G.	S.X.	Please select
0.01	2.4	0.94	Ta.16398.1.S1_at	CA605676	-	-	3e-1	At2g31300	ARPC1B (ACTIN-RELATED PROTEIN C1B)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
5.1	97.5	GSM139923	Anther telophaseI-telophaseII rep2	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
4.7	97.1	GSM139916	Anther leptotene-pachytene rep1	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
4.5	96.9	GSM139917	Anther leptotene-pachytene rep2	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
4.4	96.8	GSM139929	Anther immature pollen rep2	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
4.1	96.4	GSM139912	Anther pre-meiosis rep1	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
4.1	96.4	GSM139920	Anther diplotene-anaphaseI rep2	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
4.1	96.4	GSM139921	Anther diplotene-anaphaseI rep3	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
3.9	96.1	GSM139924	Anther telophaseI-telophaseII rep3	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
3.8	96.0	GSM139922	Anther telophaseI-telophaseII rep1	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
3.7	95.8	GSM324488	Si- B+ rep2	GSE12936	Transcriptomic analysis of the effect of silicon on wheat plants infected or uninfected with powdery mildew

Inter-species module comparison

A co-expression module including the maize gene, Zm.4750.1.S1_at, orthologous to the query gene, Ta.26251.1.S1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.95	99.6	Zm.4750.1.S1_at	At4g09153	hypothetical protein LOC100274285	-	7e-5	At2g26760	CYCB1	O.I.	H.G.	S.X.	Please select
0.65	82.1	Zm.9052.1.A1_at	At4g09153	hypothetical protein LOC100274850	-	2e+0	At5g19080	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please select
0.46	58.4	Zm.961.1.A1_at	At4g09153	LAP4 protein	-	2e+0	At2g02370	-	O.I.	H.G.	S.X.	Please select
0.43	52.8	Zm.224.1.S1_at	At4g09153	outer cell layer1	-	1e-7	At4g00730	ANL2 (ANTHOCYANINLESS 2)	O.I.	H.G.	S.X.	Please select
0.42	51.3	Zm.5733.1.A1_at	At4g09153	hypothetical protein LOC100278750	-	5e-1	At5g44200	CBP20 (CAP-BINDING PROTEIN 20)	O.I.	H.G.	S.X.	Please select
0.42	51.3	Zm.10347.1.A1_a_at	At4g09153	Tousled-like kinase 1	-	3e-52	At5g20930	TSL (TOUSLED)	O.I.	H.G.	S.X.	Please select
0.39	45.6	Zm.16315.1.S1_a_at	At4g09153	plasma membrane integral protein ZmPIP1-3	-	3e-24	At3g61430	PIP1A (PLASMA MEMBRANE INTRINSIC PROTEIN 1A)	O.I.	H.G.	S.X.	Please select
0.38	44.2	Zm.4800.1.A1_at	At4g09153	glucose-6-phosphate isomerase	-	1e-40	At4g24620	PGI1 (PHOSPHOGLUCOSE ISOMERASE 1)	O.I.	H.G.	S.X.	Please select
0.33	36.0	Zm.2836.1.A1_at	At4g09153	-	-	5e+0	At2g30280	unknown protein	O.I.	H.G.	S.X.	Please select
0.31	31.6	Zm.612.1.A1_at	At4g09153	tonoplast membrane integral protein ZmTIP1-2	-	3e-8	At3g26520	TIP2 (TONOPLAST INTRINSIC PROTEIN 2)	O.I.	H.G.	S.X.	Please select
0.31	31.6	Zm.1194.1.S1_at	At4g09153	fasciclin-like arabinogalactan protein 10	-	2e-1	At5g52930	unknown protein	O.I.	H.G.	S.X.	Please select
0.28	28.1	Zm.6485.1.A1_at	At4g09153	growth-regulating factor 2-like	-	9e-9	At2g22840	AtGRF1 (GROWTH-REGULATING FACTOR 1)	O.I.	H.G.	S.X.	Please select
0.28	28.1	Zm.6728.1.A1_at	At4g09153	hydroxymethylglutaryl-CoA lyase	-	4e-1	At1g62490	mitochondrial transcription termination factor-related / mTERF-related	O.I.	H.G.	S.X.	Please select
0.27	24.6	Zm.2407.1.A1_a_at	At4g09153	hypothetical protein LOC100191492	-	6e+0	At5g19370	rhodanese-like domain-containing protein / PPIC-type PPIASE domain-containing protein	O.I.	H.G.	S.X.	Please select
0.27	24.6	Zm.9494.1.A1_a_at	At4g09153	hypothetical protein LOC100193285	-	2e+0	At1g32720	unknown protein	O.I.	H.G.	S.X.	Please select
0.23	18.6	Zm.3084.1.A1_at	At4g09153	hypothetical protein LOC100216830	-	9e-1	At5g56600	PRF3 (PROFILIN 3)	O.I.	H.G.	S.X.	Please select
0.23	18.6	Zm.4283.2.A1_at	At4g09153	-	-	4e-26	At2g40290	eukaryotic translation initiation factor 2 subunit 1, putative / eIF-2A, putative / eIF-2-alpha, putative	O.I.	H.G.	S.X.	Please select
0.19	12.8	Zm.13543.1.A1_at	At4g09153	-	-	2e-22	At1g63160	replication factor C 40 kDa, putative	O.I.	H.G.	S.X.	Please select
0.18	11.6	Zm.2134.1.A1_at	At4g09153	-	-	9e-2	At2g41780	unknown protein	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

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