Co-expression analysis

Gene ID	Ta.26251.1.S1_at
Gene name
Homology with Arabidopsis	Similar to At4g09153: LCR36 (Low-molecular-weight cysteine-rich 36) (HF=4e-1)
Module size	6 genes
NF	0.02
%ile	6.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.2	0.87	Ta.26251.1.S1_at	CD491705	-	-	4e-1	At4g09153	LCR36 (Low-molecular-weight cysteine-rich 36)	O.I.	H.G.	S.X.	Please select
0.09	10.4	0.95	Ta.4999.1.S1_at	BJ270254	-	-	8e+0	At5g22440	60S ribosomal protein L10A (RPL10aC)	O.I.	H.G.	S.X.	Please select
0.06	7.6	0.93	TaAffx.37589.1.A1_at	BJ272379	-	-	4e+0	At5g53895	unknown protein	O.I.	H.G.	S.X.	Please select
0.03	4.7	0.95	TaAffx.92721.1.A1_at	BJ250943	-	-	1e+0	At4g27990	YGGT family protein	O.I.	H.G.	S.X.	Please select
0.03	4.7	0.95	Ta.12116.1.A1_at	BQ171628	-	-	1e+0	At2g18240	RER1 protein, putative	O.I.	H.G.	S.X.	Please select
0.01	2.4	0.94	Ta.16398.1.S1_at	CA605676	-	-	3e-1	At2g31300	ARPC1B (ACTIN-RELATED PROTEIN C1B)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
5.1	97.5	GSM139923	Anther telophaseI-telophaseII rep2	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
4.7	97.1	GSM139916	Anther leptotene-pachytene rep1	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
4.5	96.9	GSM139917	Anther leptotene-pachytene rep2	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
4.4	96.8	GSM139929	Anther immature pollen rep2	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
4.1	96.4	GSM139912	Anther pre-meiosis rep1	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
4.1	96.4	GSM139920	Anther diplotene-anaphaseI rep2	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
4.1	96.4	GSM139921	Anther diplotene-anaphaseI rep3	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
3.9	96.1	GSM139924	Anther telophaseI-telophaseII rep3	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
3.8	96.0	GSM139922	Anther telophaseI-telophaseII rep1	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
3.7	95.8	GSM324488	Si- B+ rep2	GSE12936	Transcriptomic analysis of the effect of silicon on wheat plants infected or uninfected with powdery mildew

Inter-species module comparison

A co-expression module including the barley gene, Contig20086_s_at, orthologous to the query gene, Ta.26251.1.S1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.59	75.8	Contig20086_s_at	At4g09153	-	-	1e+0	At5g57570	-	O.I.	H.G.	S.X.	Please select
0.50	66.9	Contig7267_at	At4g09153	-	-	1e-3	At5g07460	PMSR2 (PEPTIDEMETHIONINE SULFOXIDE REDUCTASE 2)	O.I.	H.G.	S.X.	Please select
0.50	66.9	Contig21692_at	At4g09153	-	-	3e+0	At2g35970	harpin-induced family protein / HIN1 family protein / harpin-responsive family protein	O.I.	H.G.	S.X.	Please select
0.47	62.2	Contig13204_at	At4g09153	-	-	6e-1	At2g03570	unknown protein	O.I.	H.G.	S.X.	Please select
0.38	49.5	Contig9680_at	At4g09153	-	-	6e-2	At3g23050	IAA7 (INDOLE-3-ACETIC ACID 7)	O.I.	H.G.	S.X.	Please select
0.29	35.5	Contig8795_at	At4g09153	-	-	6e-1	At2g26500	cytochrome b6f complex subunit (petM), putative	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

Zea_mays

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