Co-expression analysis

Gene ID	Ta.26066.1.S1_at
Gene name
Homology with Arabidopsis	Similar to At3g21110: PUR7 (PURIN 7) (HF=7e-13)
Module size	6 genes
NF	0.08
%ile	19.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.83	93.4	0.96	Ta.26066.1.S1_at	CD452401	-	-	7e-13	At3g21110	PUR7 (PURIN 7)	O.I.	H.G.	S.X.	Please select
0.43	62.2	0.97	Ta.13282.1.S1_at	CD373866	-	-	5e-8	At1g48650	helicase domain-containing protein	O.I.	H.G.	S.X.	Please select
0.08	9.4	0.97	Ta.6823.1.A1_at	BQ168375	-	-	7e-9	At1g12910	ATAN11 (ANTHOCYANIN11)	O.I.	H.G.	S.X.	Please select
0.08	9.4	0.97	Ta.14271.1.S1_at	BQ838640	-	-	3e-34	At5g46210	CUL4 (CULLIN4)	O.I.	H.G.	S.X.	Please select
0.06	7.6	0.97	Ta.1816.1.S1_at	AJ614274	-	-	2e+0	At5g06200	integral membrane family protein	O.I.	H.G.	S.X.	Please select
0.02	3.6	0.97	Ta.5100.2.S1_at	BJ272656	-	-	5e-34	At5g09590	MTHSC70-2 (MITOCHONDRIAL HSP70 2)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
13.7	99.5	GSM314286	tissue type: 22 DAP embryo - rep3	GSE12508	Transcription patterns during wheat development
12.6	99.4	GSM298067	Leaf tissue of Paragon at 5 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
12.5	99.4	GSM314285	tissue type: 22 DAP embryo - rep2	GSE12508	Transcription patterns during wheat development
10.6	99.2	GSM314284	tissue type: 22 DAP embryo - rep1	GSE12508	Transcription patterns during wheat development
9.5	99.1	GSM250900	TcLr34_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
5.3	97.6	GSM250906	TcLr34_7dpi_inoculated_rep1	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
4.1	96.4	GSM250912	TcLr34_7dpi_inoculated_rep2	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
3.6	95.6	GSM250911	TcLr34_7dpi_mock_rep2	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
3.5	95.4	GSM250896	Tc_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
3.5	95.4	GSM298070	Leaf tissue of Paragon at 9 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars

Inter-species module comparison

A co-expression module including the barley gene, Contig24690_at, orthologous to the query gene, Ta.26066.1.S1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.53	69.7	Contig24690_at	At3g21110	-	-	8e-18	At3g21110	PUR7 (PURIN 7)	O.I.	H.G.	S.X.	Please select
0.20	21.1	Contig21260_at	At3g21110	-	-	1e+0	At1g29490	auxin-responsive family protein	O.I.	H.G.	S.X.	Please select
0.15	14.1	Contig7644_at	At3g21110	-	-	8e-1	At3g42310	unknown protein	O.I.	H.G.	S.X.	Please select
0.12	10.4	Contig8267_at	At3g21110	-	-	2e-5	At1g72810	threonine synthase, putative	O.I.	H.G.	S.X.	Please select
0.10	8.4	Contig7539_s_at	At3g21110	-	-	3e-13	At4g07960	ATCSLC12 (CELLULOSE-SYNTHASE LIKE C12)	O.I.	H.G.	S.X.	Please select
0.06	4.8	Contig15981_at	At3g21110	-	-	1e+0	At5g48050	unknown protein	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage