Co-expression analysis

Gene ID	Ta.26066.1.S1_at
Gene name
Homology with Arabidopsis	Similar to At3g21110: PUR7 (PURIN 7) (HF=7e-13)
Module size	6 genes
NF	0.08
%ile	19.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.83	93.4	0.96	Ta.26066.1.S1_at	CD452401	-	-	7e-13	At3g21110	PUR7 (PURIN 7)	O.I.	H.G.	S.X.	Please select
0.43	62.2	0.97	Ta.13282.1.S1_at	CD373866	-	-	5e-8	At1g48650	helicase domain-containing protein	O.I.	H.G.	S.X.	Please select
0.08	9.4	0.97	Ta.6823.1.A1_at	BQ168375	-	-	7e-9	At1g12910	ATAN11 (ANTHOCYANIN11)	O.I.	H.G.	S.X.	Please select
0.08	9.4	0.97	Ta.14271.1.S1_at	BQ838640	-	-	3e-34	At5g46210	CUL4 (CULLIN4)	O.I.	H.G.	S.X.	Please select
0.06	7.6	0.97	Ta.1816.1.S1_at	AJ614274	-	-	2e+0	At5g06200	integral membrane family protein	O.I.	H.G.	S.X.	Please select
0.02	3.6	0.97	Ta.5100.2.S1_at	BJ272656	-	-	5e-34	At5g09590	MTHSC70-2 (MITOCHONDRIAL HSP70 2)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
13.7	99.5	GSM314286	tissue type: 22 DAP embryo - rep3	GSE12508	Transcription patterns during wheat development
12.6	99.4	GSM298067	Leaf tissue of Paragon at 5 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
12.5	99.4	GSM314285	tissue type: 22 DAP embryo - rep2	GSE12508	Transcription patterns during wheat development
10.6	99.2	GSM314284	tissue type: 22 DAP embryo - rep1	GSE12508	Transcription patterns during wheat development
9.5	99.1	GSM250900	TcLr34_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
5.3	97.6	GSM250906	TcLr34_7dpi_inoculated_rep1	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
4.1	96.4	GSM250912	TcLr34_7dpi_inoculated_rep2	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
3.6	95.6	GSM250911	TcLr34_7dpi_mock_rep2	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
3.5	95.4	GSM250896	Tc_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
3.5	95.4	GSM298070	Leaf tissue of Paragon at 9 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars

Inter-species module comparison

A co-expression module including the soybean gene, Gma.4693.1.S1_at, orthologous to the query gene, Ta.26066.1.S1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.90	93.7	Gma.4693.1.S1_at	At3g21110	-	-	3e-21	At3g21110	PUR7 (PURIN 7)	O.I.	H.G.	S.X.	Please select
0.41	58.1	GmaAffx.17355.1.S1_at	At3g21110	-	-	1e-57	At2g35040	AICARFT/IMPCHase bienzyme family protein	O.I.	H.G.	S.X.	Please select
0.37	51.7	Gma.973.1.S1_at	At3g21110	-	-	1e-69	At2g01250	60S ribosomal protein L7 (RPL7B)	O.I.	H.G.	S.X.	Please select
0.37	51.7	Gma.6014.1.S1_at	At3g21110	-	-	8e-111	At1g53850	PAE1	O.I.	H.G.	S.X.	Please select
0.37	51.7	Gma.1003.1.S1_at	At3g21110	-	-	1e-20	At2g39960	microsomal signal peptidase 25 kDa subunit, putative (SPC25)	O.I.	H.G.	S.X.	Please select
0.34	47.2	Gma.9850.1.S1_at	At3g21110	-	-	5e-6	At5g27820	ribosomal protein L18 family protein	O.I.	H.G.	S.X.	Please select
0.31	42.2	Gma.787.1.S1_at	At3g21110	-	-	1e-7	At4g21150	HAP6 (HAPLESS 6)	O.I.	H.G.	S.X.	Please select
0.29	39.0	Gma.16192.1.S1_at	At3g21110	-	-	2e-58	At2g47610	60S ribosomal protein L7A (RPL7aA)	O.I.	H.G.	S.X.	Please select
0.26	33.9	Gma.6263.1.S1_at	At3g21110	-	-	2e-112	At1g79550	PGK (PHOSPHOGLYCERATE KINASE)	O.I.	H.G.	S.X.	Please select
0.26	33.9	Gma.17859.1.S1_at	At3g21110	-	-	3e-45	At3g02560	40S ribosomal protein S7 (RPS7B)	O.I.	H.G.	S.X.	Please select
0.26	33.9	GmaAffx.46888.1.A1_at	At3g21110	-	-	4e+0	At4g12480	pEARLI 1	O.I.	H.G.	S.X.	Please select
0.26	33.9	Gma.7397.1.S1_at	At3g21110	-	-	2e-3	At2g20360	binding / catalytic/ coenzyme binding	O.I.	H.G.	S.X.	Please select
0.26	33.9	Gma.5663.1.S1_at	At3g21110	-	-	4e-12	At3g03100	NADH:ubiquinone oxidoreductase family protein	O.I.	H.G.	S.X.	Please select
0.25	32.6	Gma.5808.1.S1_at	At3g21110	-	-	0	At1g53750	RPT1A (REGULATORY PARTICLE TRIPLE-A 1A)	O.I.	H.G.	S.X.	Please select
0.23	29.9	Gma.6740.1.S1_x_at	At3g21110	-	-	5e-83	At4g14320	60S ribosomal protein L36a/L44 (RPL36aB)	O.I.	H.G.	S.X.	Please select
0.21	26.6	Gma.3423.1.S1_at	At3g21110	-	-	2e-10	At1g65540	calcium-binding EF hand family protein	O.I.	H.G.	S.X.	Please select
0.20	25.1	Gma.4814.1.S1_s_at	At3g21110	-	-	9e-46	At5g16070	chaperonin, putative	O.I.	H.G.	S.X.	Please select
0.20	25.1	Gma.802.1.S1_x_at	At3g21110	-	-	3e-29	At2g40510	40S ribosomal protein S26 (RPS26A)	O.I.	H.G.	S.X.	Please select
0.20	25.1	Gma.17644.1.S1_s_at	At3g21110	-	-	3e-4	At2g27710	60S acidic ribosomal protein P2 (RPP2B)	O.I.	H.G.	S.X.	Please select
0.19	23.7	Gma.16923.1.A1_s_at	At3g21110	-	-	5e-5	At2g46505	SDH4	O.I.	H.G.	S.X.	Please select
0.19	23.7	Gma.3838.1.S1_at	At3g21110	-	-	4e-8	At4g15940	fumarylacetoacetate hydrolase family protein	O.I.	H.G.	S.X.	Please select
0.19	23.7	GmaAffx.92687.1.S1_s_at	At3g21110	-	-	1e-28	At1g48830	40S ribosomal protein S7 (RPS7A)	O.I.	H.G.	S.X.	Please select
0.18	22.3	GmaAffx.65660.1.S1_at	At3g21110	-	-	9e-64	At5g49510	PDF3 (PREFOLDIN 3)	O.I.	H.G.	S.X.	Please select
0.18	22.3	Gma.10826.6.S1_x_at	At3g21110	-	-	6e-93	At5g55190	RAN3 (RAN GTPASE 3)	O.I.	H.G.	S.X.	Please select
0.18	22.3	Gma.14342.1.S1_at	At3g21110	-	-	6e-21	At4g35650	isocitrate dehydrogenase, putative / NAD+ isocitrate dehydrogenase, putative	O.I.	H.G.	S.X.	Please select
0.17	21.2	Gma.10826.6.S1_at	At3g21110	-	-	6e-93	At5g55190	RAN3 (RAN GTPASE 3)	O.I.	H.G.	S.X.	Please select
0.16	19.7	Gma.8648.1.S1_s_at	At3g21110	-	-	5e-1	At3g17160	unknown protein	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

Zea_mays

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