CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Ta.26066.1.S1_at

Gene name
Homology with Arabidopsis Similar to At3g21110: PUR7 (PURIN 7) (HF=7e-13)

Module size 6 genes

NF 0.08

%ile 19.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.83 93.4 0.96 Ta.26066.1.S1_at CD452401 - - 7e-13 At3g21110 PUR7 (PURIN 7) O.I. H.G. S.X.
0.43 62.2 0.97 Ta.13282.1.S1_at CD373866 - - 5e-8 At1g48650 helicase domain-containing protein O.I. H.G. S.X.
0.08 9.4 0.97 Ta.6823.1.A1_at BQ168375 - - 7e-9 At1g12910 ATAN11 (ANTHOCYANIN11) O.I. H.G. S.X.
0.08 9.4 0.97 Ta.14271.1.S1_at BQ838640 - - 3e-34 At5g46210 CUL4 (CULLIN4) O.I. H.G. S.X.
0.06 7.6 0.97 Ta.1816.1.S1_at AJ614274 - - 2e+0 At5g06200 integral membrane family protein O.I. H.G. S.X.
0.02 3.6 0.97 Ta.5100.2.S1_at BJ272656 - - 5e-34 At5g09590 MTHSC70-2 (MITOCHONDRIAL HSP70 2) O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
13.7 99.5 GSM314286 tissue type: 22 DAP embryo - rep3 GSE12508 Transcription patterns during wheat development
12.6 99.4 GSM298067 Leaf tissue of Paragon at 5 weeks post germination, biological rep 1 GSE11774 Expression data from cold treated wheat cultivars
12.5 99.4 GSM314285 tissue type: 22 DAP embryo - rep2 GSE12508 Transcription patterns during wheat development
10.6 99.2 GSM314284 tissue type: 22 DAP embryo - rep1 GSE12508 Transcription patterns during wheat development
9.5 99.1 GSM250900 TcLr34_3dpi_inoculated_rep3 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
5.3 97.6 GSM250906 TcLr34_7dpi_inoculated_rep1 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
4.1 96.4 GSM250912 TcLr34_7dpi_inoculated_rep2 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
3.6 95.6 GSM250911 TcLr34_7dpi_mock_rep2 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
3.5 95.4 GSM250896 Tc_3dpi_inoculated_rep3 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
3.5 95.4 GSM298070 Leaf tissue of Paragon at 9 weeks post germination, biological rep 2 GSE11774 Expression data from cold treated wheat cultivars

Inter-species module comparison

A co-expression module including the Arabidopsis gene, At3g21110, orthologous to the query gene, Ta.26066.1.S1_at

VF %ile Gene ID Repr. ID Gene Name Func. O.I. H.G. S.X. Other DB
1.00 100.0 At3g21110 821663 PUR7 (PURIN 7) 5'-phosphoribosyl-4-(N-succinocarboxamide)-5-aminoimidazole synthetase (PUR7, syn. SAICAR synthetase), catalyzes aspartate addition at the alpha-amino group to the growing purine backbone. O.I. H.G. S.X.
0.75 86.9 At1g13690 837930 ATE1 AtE1 - stimulates the ATPase activity of DnaK/DnaJ O.I. H.G. S.X.
0.57 73.8 At1g75330 843869 OTC (ORNITHINE CARBAMOYLTRANSFERASE) F:amino acid binding, ornithine carbamoyltransferase activity, carboxyl- or carbamoyltransferase activity;P:amino acid metabolic process;C:chloroplast, chloroplast stroma;BOAFMPV O.I. H.G. S.X.
0.55 70.6 At5g06590 830547 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. H.G. S.X.
0.50 65.3 At1g23220 838931 dynein light chain type 1 family protein F:microtubule motor activity;P:microtubule-based process;C:microtubule associated complex;MOPF O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Vitis_vinifera
Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage