Co-expression analysis

Gene ID	Ta.25958.1.A1_at
Gene name
Homology with Arabidopsis	Similar to At3g21840: ASK7 (ARABIDOPSIS SKP1-LIKE 7) (HF=3e-4)
Module size	23 genes
NF	0.81
%ile	97.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.90	94.8	0.96	Ta.25958.1.A1_at	CD454802	-	-	3e-4	At3g21840	ASK7 (ARABIDOPSIS SKP1-LIKE 7)	O.I.	H.G.	S.X.	Please select
0.91	98.2	0.97	TaAffx.64879.1.A1_at	BJ276474	-	-	5e-19	At1g75950	SKP1 (S PHASE KINASE-ASSOCIATED PROTEIN 1)	O.I.	H.G.	S.X.	Please select
0.89	94.6	0.96	TaAffx.12525.1.S1_at	BJ257367	-	-	5e+0	At4g32590	ferredoxin-related	O.I.	H.G.	S.X.	Please select
0.89	94.6	0.97	Ta.3347.1.A1_at	BJ217925	-	-	3e+0	At4g26950	unknown protein	O.I.	H.G.	S.X.	Please select
0.88	94.4	0.98	TaAffx.78658.1.S1_at	CA729450	-	-	4e+0	At2g27775	unknown protein	O.I.	H.G.	S.X.	Please select
0.86	94.1	0.97	Ta.24738.2.S1_x_at	CA605311	-	-	6e-3	At1g77120	ADH1 (ALCOHOL DEHYDROGENASE 1)	O.I.	H.G.	S.X.	Please select
0.86	94.1	0.97	Ta.11618.1.S1_at	BQ170466	-	-	2e+0	At5g57290	60S acidic ribosomal protein P3 (RPP3B)	O.I.	H.G.	S.X.	Please select
0.84	93.6	0.98	Ta.10656.1.S1_at	BQ166203	-	-	5e+0	At5g27780	auxin-responsive family protein	O.I.	H.G.	S.X.	Please select
0.82	92.7	0.96	Ta.8871.2.S1_at	CA644903	-	-	5e-2	At4g29130	HXK1 (HEXOKINASE 1)	O.I.	H.G.	S.X.	Please select
0.82	92.7	0.97	TaAffx.87061.1.S1_at	BJ306226	-	-	2e-21	At3g11730	ATFP8	O.I.	H.G.	S.X.	Please select
0.81	92.4	0.97	TaAffx.37720.1.S1_at	BJ272837	-	-	8e-15	At3g62560	GTP-binding protein, putative	O.I.	H.G.	S.X.	Please select
0.78	91.1	0.96	TaAffx.128418.32.S1_at	BJ298895	-	-	1e+0	At2g31180	MYB14 (MYB DOMAIN PROTEIN 14)	O.I.	H.G.	S.X.	Please select
0.78	91.1	0.97	Ta.3432.1.S1_at	BJ211621	-	-	2e-1	At3g31960	-	O.I.	H.G.	S.X.	Please select
0.78	91.1	0.98	TaAffx.70822.1.A1_at	BQ168694	-	-	5e-9	At3g28007	nodulin MtN3 family protein	O.I.	H.G.	S.X.	Please select
0.78	91.1	0.97	TaAffx.106036.1.S1_at	CA725569	-	-	6e-1	At2g01250	60S ribosomal protein L7 (RPL7B)	O.I.	H.G.	S.X.	Please select
0.77	90.8	0.97	Ta.11586.1.A1_at	BQ170403	-	-	9e-1	At3g55646	unknown protein	O.I.	H.G.	S.X.	Please select
0.77	90.8	0.97	TaAffx.105858.1.S1_at	CA728898	-	-	1e+0	At2g28900	ATOEP16-1 (OUTER PLASTID ENVELOPE PROTEIN 16-1)	O.I.	H.G.	S.X.	Please select
0.74	89.4	0.96	Ta.3079.2.S1_x_at	BJ256478	-	-	3e-1	At5g08330	TCP family transcription factor, putative	O.I.	H.G.	S.X.	Please select
0.72	88.3	0.97	TaAffx.88201.1.A1_at	CK212047	-	-	1e+0	At1g78870	UBC35 (UBIQUITIN-CONJUGATING ENZYME 35)	O.I.	H.G.	S.X.	Please select
0.72	88.3	0.98	TaAffx.12039.1.S1_at	CA652471	-	-	2e+0	At2g25697	unknown protein	O.I.	H.G.	S.X.	Please select
0.70	87.2	0.97	TaAffx.9509.1.S1_at	CA596542	-	-	4e+0	At5g24170	-	O.I.	H.G.	S.X.	Please select
0.70	87.2	0.96	TaAffx.120444.1.A1_at	BJ219262	-	-	3e-1	At2g07280	unknown protein	O.I.	H.G.	S.X.	Please select
0.69	86.9	0.96	TaAffx.114330.1.S1_at	CA594825	-	-	3e+0	At4g37980	ELI3-1 (ELICITOR-ACTIVATED GENE 3-1)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
10.2	99.2	GSM298070	Leaf tissue of Paragon at 9 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
9.7	99.1	GSM139926	Anther tetrads rep2	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
8.1	98.8	GSM139930	Anther immature pollen rep3	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
7.7	98.7	GSM139928	Anther immature pollen rep1	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
6.5	98.3	GSM314289	tissue type: 22 DAP endosperm - rep3	GSE12508	Transcription patterns during wheat development
5.7	97.9	GSM250900	TcLr34_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
5.6	97.8	GSM298067	Leaf tissue of Paragon at 5 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
5.6	97.8	GSM138185	genotype C25 developing seed at 5 days after anthesis, biological rep3	GSE5939	Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location
5.6	97.8	GSM314287	tissue type: 22 DAP endosperm - rep1	GSE12508	Transcription patterns during wheat development
4.9	97.3	GSM314288	tissue type: 22 DAP endosperm - rep2	GSE12508	Transcription patterns during wheat development

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

Zea_mays

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