Co-expression analysis

Gene ID Ta.2593.2.S1_x_at
Gene name
Homology with ArabidopsisSimilar to At5g62000: ARF2 (AUXIN RESPONSE FACTOR 2) (HF=1e-25)
Module size 7 genes
NF 0.40
%ile 63.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.7389.10.97Ta.2593.2.S1_x_atBQ169061--1e-25At5g62000ARF2 (AUXIN RESPONSE FACTOR 2)O.I.H.G.S.X.
0.6182.00.97Ta.2593.2.S1_atBQ169061--1e-25At5g62000ARF2 (AUXIN RESPONSE FACTOR 2)O.I.H.G.S.X.
0.4869.00.97TaAffx.131691.1.S1_atBJ320808--5e+0At2g21150XCT (XAP5 CIRCADIAN TIMEKEEPER)O.I.H.G.S.X.
0.4464.50.97Ta.4881.2.A1_a_atBJ215436--1e+0At5g06450nucleic acid bindingO.I.H.G.S.X.
0.2939.20.97TaAffx.4526.2.S1_atCA739015--1e+0Atmg00920-O.I.H.G.S.X.
0.2939.20.97Ta.12758.1.S1_x_atBM136354--2e+0At5g56980unknown proteinO.I.H.G.S.X.
0.1821.00.97Ta.9887.3.A1_x_atBJ239587--3e-2At5g5729060S acidic ribosomal protein P3 (RPP3B)O.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
23.399.8GSM315203target strand labeled: Antisense - rep1GSE12528Wheat "Chinese Spring" natural antisense transcription surveyLink to GEO
10.699.2GSM314267tissue type: seedling, leaf - rep2GSE12508Transcription patterns during wheat developmentLink to GEO
4.396.7GSM314269tissue type: immature inflorescence - rep1GSE12508Transcription patterns during wheat developmentLink to GEO
4.296.6GSM143521Thatcher_Lr34 (susceptible), mock inoculated basal leaf, replication 1GSE6227Expression data from rust or mock inoculated, fully expanded flag leaf halvesLink to GEO
4.196.4GSM314270tissue type: immature inflorescence - rep2GSE12508Transcription patterns during wheat developmentLink to GEO
3.996.1GSM143523Thatcher_Lr34 (susceptible), mock inoculated basal leaf, replication 3GSE6227Expression data from rust or mock inoculated, fully expanded flag leaf halvesLink to GEO
2.994.0GSM314271tissue type: immature inflorescence - rep3GSE12508Transcription patterns during wheat developmentLink to GEO
2.994.0GSM250898TcLr1_3dpi_inoculated_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
2.893.6GSM314286tissue type: 22 DAP embryo - rep3GSE12508Transcription patterns during wheat developmentLink to GEO
2.692.9GSM250896Tc_3dpi_inoculated_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Vitis_vinifera
Zea_mays



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