Co-expression analysis

Gene ID Ta.2593.2.S1_at
Gene name
Homology with ArabidopsisSimilar to At5g62000: ARF2 (AUXIN RESPONSE FACTOR 2) (HF=1e-25)
Module size 7 genes
NF 0.33
%ile 52.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.8092.20.97Ta.2593.2.S1_atBQ169061--1e-25At5g62000ARF2 (AUXIN RESPONSE FACTOR 2)O.I.H.G.S.X.
0.7389.10.97Ta.2593.2.S1_x_atBQ169061--1e-25At5g62000ARF2 (AUXIN RESPONSE FACTOR 2)O.I.H.G.S.X.
0.4058.40.97TaAffx.131691.1.S1_atBJ320808--5e+0At2g21150XCT (XAP5 CIRCADIAN TIMEKEEPER)O.I.H.G.S.X.
0.3346.90.97Ta.4881.2.A1_a_atBJ215436--1e+0At5g06450nucleic acid bindingO.I.H.G.S.X.
0.2939.20.97TaAffx.5323.1.S1_atBJ319065--4e-6At4g32600zinc finger (C3HC4-type RING finger) family proteinO.I.H.G.S.X.
0.1922.40.97Ta.9887.3.A1_x_atBJ239587--3e-2At5g5729060S acidic ribosomal protein P3 (RPP3B)O.I.H.G.S.X.
0.1517.10.97Ta.9637.1.S1_atBJ273485--5e-1At3g53490unknown proteinO.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
11.299.3GSM314267tissue type: seedling, leaf - rep2GSE12508Transcription patterns during wheat developmentLink to GEO
7.098.5GSM315203target strand labeled: Antisense - rep1GSE12528Wheat "Chinese Spring" natural antisense transcription surveyLink to GEO
4.396.7GSM314269tissue type: immature inflorescence - rep1GSE12508Transcription patterns during wheat developmentLink to GEO
4.196.4GSM250899TcLr34_3dpi_mock_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
4.196.4GSM143521Thatcher_Lr34 (susceptible), mock inoculated basal leaf, replication 1GSE6227Expression data from rust or mock inoculated, fully expanded flag leaf halvesLink to GEO
3.795.8GSM314270tissue type: immature inflorescence - rep2GSE12508Transcription patterns during wheat developmentLink to GEO
3.795.8GSM143523Thatcher_Lr34 (susceptible), mock inoculated basal leaf, replication 3GSE6227Expression data from rust or mock inoculated, fully expanded flag leaf halvesLink to GEO
3.294.8GSM314271tissue type: immature inflorescence - rep3GSE12508Transcription patterns during wheat developmentLink to GEO
2.893.6GSM343685Wheat var. Kennedy_control_rep3GSE13660Gene expression analysis of the wheat response to infection by Fusarium pseudograminearumLink to GEO
2.893.6GSM314285tissue type: 22 DAP embryo - rep2GSE12508Transcription patterns during wheat developmentLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Vitis_vinifera
Zea_mays



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