Co-expression analysis

Gene ID Ta.2593.1.S1_at
Gene name
Homology with ArabidopsisSimilar to At5g62000: ARF2 (AUXIN RESPONSE FACTOR 2) (HF=2e-10)
Module size 11 genes
NF 0.12
%ile 25.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9198.20.94Ta.2593.1.S1_atBJ307314--2e-10At5g62000ARF2 (AUXIN RESPONSE FACTOR 2)O.I.H.G.S.X.
0.2939.20.97Ta.7383.1.A1_atCA722162--5e-1At5g44316ATP-binding-cassette transporter, putativeO.I.H.G.S.X.
0.2735.60.97Ta.3070.1.S1_x_atBJ229772mitogen-activated protein kinase 2-7e-27At5g19010MPK16O.I.H.G.S.X.
0.2633.60.97TaAffx.42378.1.S1_atBE213259--1e-1At1g1525060S ribosomal protein L37 (RPL37A)O.I.H.G.S.X.
0.1922.40.97TaAffx.72146.1.S1_atBQ169248--8e-1At5g20447unknown proteinO.I.H.G.S.X.
0.1821.00.96Ta.6142.1.A1_atBQ169906--1e-2At5g63330-O.I.H.G.S.X.
0.1415.80.97Ta.3183.1.A1_atBJ307037--5e+0At5g19630unknown proteinO.I.H.G.S.X.
0.1314.60.95TaAffx.92436.1.A1_atBJ266428--1e+0At3g11530vacuolar protein sorting 55 family protein / VPS55 family proteinO.I.H.G.S.X.
0.089.40.97Ta.16511.1.S1_atBQ168702--3e-5At5g08450-O.I.H.G.S.X.
0.078.60.97Ta.3516.1.S1_atBJ296772--2e-7At5g26210AL4 (ALFIN-LIKE 4)O.I.H.G.S.X.
0.034.70.94Ta.26000.1.A1_atCD454520--6e+0At5g03220transcriptional co-activator-relatedO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
11.799.3GSM315202target strand labeled: Sense - rep1GSE12528Wheat "Chinese Spring" natural antisense transcription surveyLink to GEO
5.797.9GSM314286tissue type: 22 DAP embryo - rep3GSE12508Transcription patterns during wheat developmentLink to GEO
5.097.4GSM314284tissue type: 22 DAP embryo - rep1GSE12508Transcription patterns during wheat developmentLink to GEO
4.997.3GSM314289tissue type: 22 DAP endosperm - rep3GSE12508Transcription patterns during wheat developmentLink to GEO
4.396.7GSM314285tissue type: 22 DAP embryo - rep2GSE12508Transcription patterns during wheat developmentLink to GEO
3.795.8GSM298094Crown tissue of Solstice at 9 weeks post germinationGSE11774Expression data from cold treated wheat cultivarsLink to GEO
3.695.6GSM298075Crown tissue of Paragon at 9 weeks post germination, biological rep 1GSE11774Expression data from cold treated wheat cultivarsLink to GEO
2.994.0GSM298092Crown tissue of Solstice at 3 weeks post germinationGSE11774Expression data from cold treated wheat cultivarsLink to GEO
2.793.3GSM343688Wheat var. Kennedy_Fp inoculated_rep3GSE13660Gene expression analysis of the wheat response to infection by Fusarium pseudograminearumLink to GEO
2.793.3GSM314288tissue type: 22 DAP endosperm - rep2GSE12508Transcription patterns during wheat developmentLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Vitis_vinifera
Zea_mays



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