Co-expression analysis

Gene ID	Ta.25927.1.A1_at
Gene name
Homology with Arabidopsis	Similar to At2g36916: unknown protein (HF=5e+0)
Module size	6 genes
NF	0.38
%ile	60.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.50	72.4	0.80	Ta.25927.1.A1_at	CD454513	-	-	5e+0	At2g36916	unknown protein	O.I.	H.G.	S.X.	Please select
0.57	79.2	0.81	TaAffx.64016.1.A1_at	BJ319071	-	-	1e+0	At2g13820	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	O.I.	H.G.	S.X.	Please select
0.50	72.4	0.83	Ta.25927.1.A1_x_at	CD454513	-	-	5e+0	At2g36916	unknown protein	O.I.	H.G.	S.X.	Please select
0.42	60.9	0.78	Ta.3784.1.S1_a_at	CD453769	-	-	3e-6	At5g02790	In2-1 protein, putative	O.I.	H.G.	S.X.	Please select
0.36	51.9	0.80	TaAffx.12607.1.S1_at	BE429383	-	-	2e-1	At1g45191	-	O.I.	H.G.	S.X.	Please select
0.17	19.8	0.79	Ta.4157.1.S1_at	BJ265659	-	-	5e+0	At5g62280	unknown protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
25.6	99.8	GSM314273	tissue type: floral bracts, before anthesis - rep2	GSE12508	Transcription patterns during wheat development
21.7	99.8	GSM314274	tissue type: floral bracts, before anthesis - rep3	GSE12508	Transcription patterns during wheat development
20.2	99.7	GSM314272	tissue type: floral bracts, before anthesis - rep1	GSE12508	Transcription patterns during wheat development
4.3	96.7	GSM324491	Si+ B- rep2	GSE12936	Transcriptomic analysis of the effect of silicon on wheat plants infected or uninfected with powdery mildew
4.1	96.4	GSM143498	Jupateco_Lr34 (susceptible), mock inoculated basal leaf, replication 3	GSE6227	Expression data from rust or mock inoculated, fully expanded flag leaf halves
4.0	96.3	GSM143493	Jupateco_Lr34 (resistant), mock inoculated distal leaf, replication 1	GSE6227	Expression data from rust or mock inoculated, fully expanded flag leaf halves
3.5	95.4	GSM143500	Jupateco_Lr34 (susceptible), mock inoculated distal leaf, replication 2	GSE6227	Expression data from rust or mock inoculated, fully expanded flag leaf halves
3.3	95.0	GSM143492	Jupateco_Lr34 (resistant), mock inoculated basal leaf, replication 3	GSE6227	Expression data from rust or mock inoculated, fully expanded flag leaf halves
3.0	94.3	GSM324486	Si- B- rep3	GSE12936	Transcriptomic analysis of the effect of silicon on wheat plants infected or uninfected with powdery mildew
3.0	94.3	GSM298092	Crown tissue of Solstice at 3 weeks post germination	GSE11774	Expression data from cold treated wheat cultivars

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage