Co-expression analysis

Gene ID	Ta.25763.1.S1_at
Gene name
Homology with Arabidopsis	Similar to At3g58470: methyltransferase/ nucleic acid binding (HF=6e+0)
Module size	30 genes
NF	0.10
%ile	21.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.97	99.6	0.82	Ta.25763.1.S1_at	CD373822	-	-	6e+0	At3g58470	methyltransferase/ nucleic acid binding	O.I.	H.G.	S.X.	Please select
0.24	30.3	0.92	TaAffx.56282.1.S1_s_at	CA654808	-	-	4e+0	At3g22020	-	O.I.	H.G.	S.X.	Please select
0.20	24.0	0.91	Ta.4077.3.S1_a_at	CA654749	-	-	1e+0	At5g38140	NF-YC12 (NUCLEAR FACTOR Y, SUBUNIT C12)	O.I.	H.G.	S.X.	Please select
0.19	22.4	0.93	TaAffx.58521.1.S1_at	CA618886	-	-	1e-2	At5g45350	proline-rich family protein	O.I.	H.G.	S.X.	Please select
0.18	21.0	0.93	Ta.438.1.S1_x_at	BG908651	-	-	5e+0	At3g54820	PIP2	O.I.	H.G.	S.X.	Please select
0.18	21.0	0.94	Ta.3698.1.S1_at	BJ246029	-	-	4e+0	At4g32260	ATP synthase family	O.I.	H.G.	S.X.	Please select
0.16	18.2	0.93	TaAffx.3524.2.S1_x_at	CA694260	-	-	2e+1	At2g31560	unknown protein	O.I.	H.G.	S.X.	Please select
0.16	18.2	0.94	Ta.438.2.S1_x_at	CK212622	-	-	2e-1	At2g30560	glycine-rich protein	O.I.	H.G.	S.X.	Please select
0.16	18.2	0.94	Ta.438.1.S1_a_at	BG908651	-	-	5e+0	At3g54820	PIP2	O.I.	H.G.	S.X.	Please select
0.16	18.2	0.93	TaAffx.3979.2.S1_at	CA656172	-	-	3e+0	At2g39570	ACT domain-containing protein	O.I.	H.G.	S.X.	Please select
0.14	15.8	0.95	Ta.10081.2.S1_at	BG909012	-	-	2e-4	At1g06690	aldo/keto reductase family protein	O.I.	H.G.	S.X.	Please select
0.13	14.6	0.91	Ta.3936.1.A1_at	BJ252804	-	-	4e+0	At3g26790	FUS3 (FUSCA 3)	O.I.	H.G.	S.X.	Please select
0.13	14.6	0.93	TaAffx.3524.1.S1_at	BE418657	-	-	2e-4	At1g48260	CIPK17 (CBL-INTERACTING PROTEIN KINASE 17)	O.I.	H.G.	S.X.	Please select
0.12	13.3	0.94	Ta.3936.2.S1_at	BJ246844	-	-	1e+0	At3g27460	unknown protein	O.I.	H.G.	S.X.	Please select
0.12	13.3	0.90	TaAffx.121691.2.S1_at	BJ281972	-	-	2e-9	At5g10520	RBK1 (Rop Binding protein Kinases 1)	O.I.	H.G.	S.X.	Please select
0.12	13.3	0.96	Ta.3698.2.S1_x_at	CA679345	-	-	2e+0	At4g32260	ATP synthase family	O.I.	H.G.	S.X.	Please select
0.11	12.4	0.94	Ta.23457.2.S1_at	CA660982	-	-	1e-22	At1g50360	VIIIA	O.I.	H.G.	S.X.	Please select
0.11	12.4	0.92	Ta.7032.1.S1_at	BJ314210	-	-	4e-1	At5g19830	aminoacyl-tRNA hydrolase	O.I.	H.G.	S.X.	Please select
0.09	10.4	0.93	TaAffx.27045.3.S1_s_at	CA614427	-	-	5e-6	At4g29080	PAP2 (PHYTOCHROME-ASSOCIATED PROTEIN 2)	O.I.	H.G.	S.X.	Please select
0.09	10.4	0.92	Ta.20430.2.A1_at	BJ287096	-	-	4e+0	At5g27495	ion channel inhibitor	O.I.	H.G.	S.X.	Please select
0.09	10.4	0.93	TaAffx.8993.1.S1_at	CA616697	-	-	5e-3	At4g33300	ADR1-L1 (ADR1-like 1)	O.I.	H.G.	S.X.	Please select
0.07	8.6	0.88	TaAffx.70192.1.S1_at	CA694666	-	-	5e-1	At2g43950	OEP37	O.I.	H.G.	S.X.	Please select
0.07	8.6	0.93	TaAffx.111900.1.S1_at	CA630854	-	-	1e-1	At1g06650	2-oxoglutarate-dependent dioxygenase, putative	O.I.	H.G.	S.X.	Please select
0.06	7.6	0.92	Ta.12681.2.S1_a_at	CA697542	-	-	1e+0	At5g39100	GLP6 (GERMIN-LIKE PROTEIN 6)	O.I.	H.G.	S.X.	Please select
0.06	7.6	0.93	Ta.13268.1.S1_at	BJ229779	-	-	8e-5	At3g16560	protein phosphatase 2C-related / PP2C-related	O.I.	H.G.	S.X.	Please select
0.05	6.7	0.96	Ta.511.1.S1_at	AF521190.1	nonphosphorylating glyceraldehyde-3-phosphate dehydrogenase	-	2e-60	At2g24270	ALDH11A3	O.I.	H.G.	S.X.	Please select
0.05	6.7	0.91	Ta.21428.1.S1_x_at	BJ225819	-	-	6e-5	At5g51970	sorbitol dehydrogenase, putative / L-iditol 2-dehydrogenase, putative	O.I.	H.G.	S.X.	Please select
0.05	6.7	0.95	Ta.13234.1.S1_at	CA707206	-	-	6e+0	At3g51200	auxin-responsive family protein	O.I.	H.G.	S.X.	Please select
0.05	6.7	0.91	Ta.24600.1.A1_at	BQ620307	-	-	6e+0	At1g09483	unknown protein	O.I.	H.G.	S.X.	Please select
0.04	5.8	0.96	Ta.28589.1.A1_at	CA722295	-	-	4e+0	At3g19330	polyadenylate-binding protein-related / PABP-related	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
15.6	99.6	GSM315203	target strand labeled: Antisense - rep1	GSE12528	Wheat "Chinese Spring" natural antisense transcription survey
9.0	99.0	GSM314279	tissue type: anthers, before anthesis - rep2	GSE12508	Transcription patterns during wheat development
4.1	96.4	GSM250900	TcLr34_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
4.1	96.4	GSM250896	Tc_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
4.1	96.4	GSM250898	TcLr1_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
4.0	96.3	GSM314273	tissue type: floral bracts, before anthesis - rep2	GSE12508	Transcription patterns during wheat development
3.9	96.1	GSM250895	Tc_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
3.1	94.5	GSM139927	Anther tetrads rep3	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
3.0	94.3	GSM314272	tissue type: floral bracts, before anthesis - rep1	GSE12508	Transcription patterns during wheat development
3.0	94.3	GSM143501	Jupateco_Lr34 (susceptible), mock inoculated distal leaf, replication 3	GSE6227	Expression data from rust or mock inoculated, fully expanded flag leaf halves

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

Zea_mays

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