Co-expression analysis

Gene ID	Ta.25662.1.A1_at
Gene name
Homology with Arabidopsis	Similar to At3g48840: nucleic acid binding / nucleotide binding (HF=5e+0)
Module size	7 genes
NF	0.38
%ile	61.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.60	81.0	0.97	Ta.25662.1.A1_at	CD373762	-	-	5e+0	At3g48840	nucleic acid binding / nucleotide binding	O.I.	H.G.	S.X.	Please select
0.50	72.4	0.97	TaAffx.90016.1.S1_at	BQ609730	-	-	5e+0	At5g22380	anac090 (Arabidopsis NAC domain containing protein 90)	O.I.	H.G.	S.X.	Please select
0.50	72.4	0.97	TaAffx.8051.1.S1_at	BQ482848	-	-	9e-9	At2g22370	unknown protein	O.I.	H.G.	S.X.	Please select
0.33	46.9	0.98	Ta.19696.1.S1_at	CA656618	-	-	2e-1	At2g43180	catalytic	O.I.	H.G.	S.X.	Please select
0.28	39.2	0.97	Ta.1546.1.S1_at	CD906609	-	-	8e-33	At3g58610	ketol-acid reductoisomerase	O.I.	H.G.	S.X.	Please select
0.23	29.0	0.98	Ta.5798.1.S1_at	CK172279	-	-	4e-8	At1g79430	APL (ALTERED PHLOEM DEVELOPMENT)	O.I.	H.G.	S.X.	Please select
0.18	21.0	0.98	Ta.2594.1.S1_s_at	CD880506	-	-	1e-22	At5g55160	SUMO2 (SMALL UBIQUITIN-LIKE MODIFIER 2)	O.I.	H.G.	S.X.	Please select

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Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
12.9	99.4	GSM111233	genotype H8 developing seed at 5 days after anthesis, biological rep2	GSE4935	wheat expression level polymorphism study 39 genotypes 2 biological reps
11.2	99.3	GSM250900	TcLr34_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
10.4	99.2	GSM250898	TcLr1_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
9.3	99.0	GSM250896	Tc_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
8.8	98.9	GSM314273	tissue type: floral bracts, before anthesis - rep2	GSE12508	Transcription patterns during wheat development
7.7	98.7	GSM250895	Tc_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
6.0	98.0	GSM250897	TcLr1_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
5.9	98.0	GSM298067	Leaf tissue of Paragon at 5 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
4.7	97.1	GSM314272	tissue type: floral bracts, before anthesis - rep1	GSE12508	Transcription patterns during wheat development
4.2	96.6	GSM298070	Leaf tissue of Paragon at 9 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

Zea_mays

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