Co-expression analysis

Gene ID Ta.25619.2.S1_a_at
Gene name
Homology with ArabidopsisSimilar to At2g14160: nucleic acid binding / nucleotide binding (HF=1e+0)
Module size 6 genes
NF 0.32
%ile 52.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.8092.20.95Ta.25619.2.S1_a_atCA609960--1e+0At2g14160nucleic acid binding / nucleotide bindingO.I.H.G.S.X.
0.6182.00.94TaAffx.129082.1.S1_x_atCK154420--3e-6At5g64460-O.I.H.G.S.X.
0.5072.40.94Ta.3909.1.A1_x_atBJ274929--8e-1At3g01400armadillo/beta-catenin repeat family proteinO.I.H.G.S.X.
0.4260.90.94Ta.8149.1.A1_x_atCK205375--7e-35At4g14240-O.I.H.G.S.X.
0.2227.10.94Ta.29331.2.S1_x_atCA611511FD-like 6 protein-1e+1At5g06280unknown proteinO.I.H.G.S.X.
0.1011.30.94Ta.9677.1.S1_x_atCA652973--3e+1At5g26692-O.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
12.199.4GSM314262tissue type: seedling, root - rep3GSE12508Transcription patterns during wheat developmentLink to GEO
10.799.2GSM314256tissue type: germinating seed, root - rep3GSE12508Transcription patterns during wheat developmentLink to GEO
10.199.2GSM314260tissue type: seedling, root - rep1GSE12508Transcription patterns during wheat developmentLink to GEO
9.399.0GSM314261tissue type: seedling, root - rep2GSE12508Transcription patterns during wheat developmentLink to GEO
9.199.0GSM314255tissue type: germinating seed, root - rep2GSE12508Transcription patterns during wheat developmentLink to GEO
9.099.0GSM314254tissue type: germinating seed, root - rep1GSE12508Transcription patterns during wheat developmentLink to GEO
7.098.5GSM298070Leaf tissue of Paragon at 9 weeks post germination, biological rep 2GSE11774Expression data from cold treated wheat cultivarsLink to GEO
6.798.4GSM250900TcLr34_3dpi_inoculated_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
5.697.8GSM143521Thatcher_Lr34 (susceptible), mock inoculated basal leaf, replication 1GSE6227Expression data from rust or mock inoculated, fully expanded flag leaf halvesLink to GEO
5.297.5GSM143508Thatcher_Lr34 (resistant), mock inoculated basal leaf, replication 1GSE6227Expression data from rust or mock inoculated, fully expanded flag leaf halvesLink to GEO

Inter-species module comparison

A co-expression module including the maize gene, Zm.10522.2.A1_at, orthologous to the query gene, Ta.25619.2.S1_a_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.4352.8Zm.10522.2.A1_atAt2g14160ataxin-3-3e-1At3g06610DNA-binding enhancer protein-relatedO.I.H.G.S.X.
0.5571.6ZmAffx.908.1.S1_atAt2g14160hypothetical protein LOC100279225-8e-1At5g41720-O.I.H.G.S.X.
0.5571.6Zm.9952.1.A1_atAt2g14160--6e+0At5g46115unknown proteinO.I.H.G.S.X.
0.5065.7Zm.3594.1.A1_atAt2g14160--1e+0At1g79180MYB63 (MYB DOMAIN PROTEIN 63)O.I.H.G.S.X.
0.4048.5Zm.18136.1.S1_atAt2g14160--1e+1At5g02710unknown proteinO.I.H.G.S.X.
0.3538.9ZmAffx.848.1.A1_atAt2g14160--8e-1At1g22720wall-associated kinase, putativeO.I.H.G.S.X.
0.3233.4Zm.10674.1.A1_atAt2g14160hypothetical protein LOC100194243-1e+0At4g25720QC (GLUTAMINYL CYCLASE)O.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Vitis_vinifera



Back to the CoP portal site

Back to the KAGIANA project homepage