Co-expression analysis

Gene ID	Ta.25619.2.S1_a_at
Gene name
Homology with Arabidopsis	Similar to At2g14160: nucleic acid binding / nucleotide binding (HF=1e+0)
Module size	6 genes
NF	0.32
%ile	52.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.80	92.2	0.95	Ta.25619.2.S1_a_at	CA609960	-	-	1e+0	At2g14160	nucleic acid binding / nucleotide binding	O.I.	H.G.	S.X.	Please select
0.61	82.0	0.94	TaAffx.129082.1.S1_x_at	CK154420	-	-	3e-6	At5g64460	-	O.I.	H.G.	S.X.	Please select
0.50	72.4	0.94	Ta.3909.1.A1_x_at	BJ274929	-	-	8e-1	At3g01400	armadillo/beta-catenin repeat family protein	O.I.	H.G.	S.X.	Please select
0.42	60.9	0.94	Ta.8149.1.A1_x_at	CK205375	-	-	7e-35	At4g14240	-	O.I.	H.G.	S.X.	Please select
0.22	27.1	0.94	Ta.29331.2.S1_x_at	CA611511	FD-like 6 protein	-	1e+1	At5g06280	unknown protein	O.I.	H.G.	S.X.	Please select
0.10	11.3	0.94	Ta.9677.1.S1_x_at	CA652973	-	-	3e+1	At5g26692	-	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
12.1	99.4	GSM314262	tissue type: seedling, root - rep3	GSE12508	Transcription patterns during wheat development
10.7	99.2	GSM314256	tissue type: germinating seed, root - rep3	GSE12508	Transcription patterns during wheat development
10.1	99.2	GSM314260	tissue type: seedling, root - rep1	GSE12508	Transcription patterns during wheat development
9.3	99.0	GSM314261	tissue type: seedling, root - rep2	GSE12508	Transcription patterns during wheat development
9.1	99.0	GSM314255	tissue type: germinating seed, root - rep2	GSE12508	Transcription patterns during wheat development
9.0	99.0	GSM314254	tissue type: germinating seed, root - rep1	GSE12508	Transcription patterns during wheat development
7.0	98.5	GSM298070	Leaf tissue of Paragon at 9 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
6.7	98.4	GSM250900	TcLr34_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
5.6	97.8	GSM143521	Thatcher_Lr34 (susceptible), mock inoculated basal leaf, replication 1	GSE6227	Expression data from rust or mock inoculated, fully expanded flag leaf halves
5.2	97.5	GSM143508	Thatcher_Lr34 (resistant), mock inoculated basal leaf, replication 1	GSE6227	Expression data from rust or mock inoculated, fully expanded flag leaf halves

Inter-species module comparison

A co-expression module including the grape gene, 1616790_at, orthologous to the query gene, Ta.25619.2.S1_a_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.71	89.5	1616790_at	At2g14160	-	-	3e+0	At5g54590	protein kinase family protein	O.I.	H.G.	S.X.	Please select
0.44	64.1	1613000_at	At2g14160	-	-	4e+0	At4g11600	ATGPX6 (GLUTATHIONE PEROXIDASE 6)	O.I.	H.G.	S.X.	Please select
0.44	64.1	1617636_at	At2g14160	-	-	4e+0	At5g46295	unknown protein	O.I.	H.G.	S.X.	Please select
0.31	41.3	1619571_at	At2g14160	-	-	4e+0	At5g04047	-	O.I.	H.G.	S.X.	Please select
0.25	30.5	1611393_at	At2g14160	-	-	4e+0	At5g03440	unknown protein	O.I.	H.G.	S.X.	Please select
0.11	11.3	1610717_at	At2g14160	-	-	3e+0	At3g52980	RNA recognition motif (RRM)-containing protein	O.I.	H.G.	S.X.	Please select
0.10	10.3	1606864_at	At2g14160	-	-	5e+0	At4g38570	PIS2 (PROBABLE CDP-DIACYLGLYCEROL--INOSITOL 3-PHOSPHATIDYLTRANSFERASE 2)	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Zea_mays

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