CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Ta.25619.2.S1_a_at

Gene name
Homology with Arabidopsis Similar to At2g14160: nucleic acid binding / nucleotide binding (HF=1e+0)

Module size 6 genes

NF 0.32

%ile 52.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.80 92.2 0.95 Ta.25619.2.S1_a_at CA609960 - - 1e+0 At2g14160 nucleic acid binding / nucleotide binding O.I. H.G. S.X.
0.61 82.0 0.94 TaAffx.129082.1.S1_x_at CK154420 - - 3e-6 At5g64460 - O.I. H.G. S.X.
0.50 72.4 0.94 Ta.3909.1.A1_x_at BJ274929 - - 8e-1 At3g01400 armadillo/beta-catenin repeat family protein O.I. H.G. S.X.
0.42 60.9 0.94 Ta.8149.1.A1_x_at CK205375 - - 7e-35 At4g14240 - O.I. H.G. S.X.
0.22 27.1 0.94 Ta.29331.2.S1_x_at CA611511 FD-like 6 protein - 1e+1 At5g06280 unknown protein O.I. H.G. S.X.
0.10 11.3 0.94 Ta.9677.1.S1_x_at CA652973 - - 3e+1 At5g26692 - O.I. H.G. S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.80	92.2	0.95	Ta.25619.2.S1_a_at	CA609960	-	-	1e+0	At2g14160	nucleic acid binding / nucleotide binding	O.I.	H.G.	S.X.
0.61	82.0	0.94	TaAffx.129082.1.S1_x_at	CK154420	-	-	3e-6	At5g64460	-	O.I.	H.G.	S.X.
0.50	72.4	0.94	Ta.3909.1.A1_x_at	BJ274929	-	-	8e-1	At3g01400	armadillo/beta-catenin repeat family protein	O.I.	H.G.	S.X.
0.42	60.9	0.94	Ta.8149.1.A1_x_at	CK205375	-	-	7e-35	At4g14240	-	O.I.	H.G.	S.X.
0.22	27.1	0.94	Ta.29331.2.S1_x_at	CA611511	FD-like 6 protein	-	1e+1	At5g06280	unknown protein	O.I.	H.G.	S.X.
0.10	11.3	0.94	Ta.9677.1.S1_x_at	CA652973	-	-	3e+1	At5g26692	-	O.I.	H.G.	S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
12.1 99.4 GSM314262 tissue type: seedling, root - rep3 GSE12508 Transcription patterns during wheat development
10.7 99.2 GSM314256 tissue type: germinating seed, root - rep3 GSE12508 Transcription patterns during wheat development
10.1 99.2 GSM314260 tissue type: seedling, root - rep1 GSE12508 Transcription patterns during wheat development
9.3 99.0 GSM314261 tissue type: seedling, root - rep2 GSE12508 Transcription patterns during wheat development
9.1 99.0 GSM314255 tissue type: germinating seed, root - rep2 GSE12508 Transcription patterns during wheat development
9.0 99.0 GSM314254 tissue type: germinating seed, root - rep1 GSE12508 Transcription patterns during wheat development
7.0 98.5 GSM298070 Leaf tissue of Paragon at 9 weeks post germination, biological rep 2 GSE11774 Expression data from cold treated wheat cultivars
6.7 98.4 GSM250900 TcLr34_3dpi_inoculated_rep3 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
5.6 97.8 GSM143521 Thatcher_Lr34 (susceptible), mock inoculated basal leaf, replication 1 GSE6227 Expression data from rust or mock inoculated, fully expanded flag leaf halves
5.2 97.5 GSM143508 Thatcher_Lr34 (resistant), mock inoculated basal leaf, replication 1 GSE6227 Expression data from rust or mock inoculated, fully expanded flag leaf halves

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title
12.1	99.4	GSM314262	tissue type: seedling, root - rep3	GSE12508	Transcription patterns during wheat development
10.7	99.2	GSM314256	tissue type: germinating seed, root - rep3	GSE12508	Transcription patterns during wheat development
10.1	99.2	GSM314260	tissue type: seedling, root - rep1	GSE12508	Transcription patterns during wheat development
9.3	99.0	GSM314261	tissue type: seedling, root - rep2	GSE12508	Transcription patterns during wheat development
9.1	99.0	GSM314255	tissue type: germinating seed, root - rep2	GSE12508	Transcription patterns during wheat development
9.0	99.0	GSM314254	tissue type: germinating seed, root - rep1	GSE12508	Transcription patterns during wheat development
7.0	98.5	GSM298070	Leaf tissue of Paragon at 9 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
6.7	98.4	GSM250900	TcLr34_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
5.6	97.8	GSM143521	Thatcher_Lr34 (susceptible), mock inoculated basal leaf, replication 1	GSE6227	Expression data from rust or mock inoculated, fully expanded flag leaf halves
5.2	97.5	GSM143508	Thatcher_Lr34 (resistant), mock inoculated basal leaf, replication 1	GSE6227	Expression data from rust or mock inoculated, fully expanded flag leaf halves

Inter-species module comparison

A co-expression module including the rice gene, Os03g0100900, orthologous to the query gene, Ta.25619.2.S1_a_at

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.97 99.9 Os03g0100900 At2g14160 - Eukaryotic protein of unknown function DUF862family protein 7e-4 At4g17486 unknown protein O.I. H.G. S.X.
0.40 51.1 Os06g0142900 At2g14160 - Conserved hypothetical protein 2e+0 At3g57310 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein O.I. H.G. S.X.
0.36 44.0 Os07g0507700 At2g14160 - Bromodomain containing protein 8e-8 At3g27260 GTE8 O.I. H.G. S.X.
0.36 44.0 Os02g0638400 At2g14160 - BRO1 domain containing protein 2e-1 At2g05510 glycine-rich protein O.I. H.G. S.X.
0.32 36.3 Os02g0324300 At2g14160 - Protein of unknown function DUF572 family protein 1e-14 At1g25682 cell cycle control protein-related O.I. H.G. S.X.
0.31 34.5 Os07g0618600 At2g14160 - Zn-finger, FYVE type domain containing protein 3e+0 At2g26210 ankyrin repeat family protein O.I. H.G. S.X.
0.30 32.7 Os03g0268000 At2g14160 - Protein phosphatase 1, catalytic gsmms subunit 9e-38 At5g59160 TOPP2 O.I. H.G. S.X.
0.30 32.7 Os03g0369800 At2g14160 - Novel plant SNARE 13 (AtNPSN13) 2e-7 At1g48240 ATNPSN12 O.I. H.G. S.X.
0.29 31.1 Os06g0711600 At2g14160 - Conserved hypothetical protein 8e-10 At2g16860 GCIP-interacting family protein O.I. H.G. S.X.
0.28 31.1 Os10g0495000 At2g14160 - KH, type 1 domain containing protein 2e-2 At5g15270 KH domain-containing protein O.I. H.G. S.X.
0.27 27.5 Os02g0735700 At2g14160 - Ankyrin repeat containing protein 6e-5 At2g01680 ankyrin repeat family protein O.I. H.G. S.X.
0.27 27.5 Os01g0813900 At2g14160 - ZIGA1 protein (Fragment) 7e-6 At1g08680 ZIGA4 (ARF GAP-like zinc finger-containing protein ZiGA4) O.I. H.G. S.X.
0.26 25.6 Os02g0759800 At2g14160 - GAMYB-binding protein (Fragment) 2e-21 At1g77180 chromatin protein family O.I. H.G. S.X.
0.26 25.6 Os05g0562200 At2g14160 - Drought induced 19 family protein 8e-1 At2g37860 LCD1 (LOWER CELL DENSITY 1) O.I. H.G. S.X.
0.25 24.1 Os08g0127700 At2g14160 - Conserved hypothetical protein 2e-48 At4g37120 SMP2 O.I. H.G. S.X.
0.25 24.1 Os01g0507500 At2g14160 - Conserved hypothetical protein 2e-1 At1g71080 unknown protein O.I. H.G. S.X.
0.25 24.1 Os06g0731400 At2g14160 - Hypothetical protein 2e-1 At5g60820 zinc finger (C3HC4-type RING finger) family protein O.I. H.G. S.X.
0.25 24.1 Os01g0184900 At2g14160 - SSRP1 protein 9e-11 At3g28730 ATHMG (ARABIDOPSIS THALIANA HIGH MOBILITY GROUP) O.I. H.G. S.X.
0.23 21.2 Os01g0280000 At2g14160 - Exonuclease domain containing protein 4e+0 At2g34700 pollen Ole e 1 allergen and extensin family protein O.I. H.G. S.X.
0.23 21.2 Os02g0438200 At2g14160 - Cyclin, N-terminal domain containing protein 4e-1 At5g60680 unknown protein O.I. H.G. S.X.
0.23 21.2 Os01g0680400 At2g14160 - TAFII28-like protein domain containing protein 2e-6 At1g20000 TAF11b (TBP-ASSOCIATED FACTOR 11b) O.I. H.G. S.X.
0.23 21.2 Os01g0852500 At2g14160 - ELM2 domain containing protein 4e+0 At5g66550 Maf family protein O.I. H.G. S.X.
0.23 21.2 Os05g0357800 At2g14160 - Phospholipid/glycerol acyltransferase familyprotein 2e-4 At1g80950 phospholipid/glycerol acyltransferase family protein O.I. H.G. S.X.
0.22 19.4 Os08g0472600 At2g14160 - Alpha1,3-fucosyltransferase (Fragment) 2e-14 At1g49710 FUT12 (FUCOSYLTRANSFERASE 12) O.I. H.G. S.X.
0.21 17.9 Os12g0597700 At2g14160 - Probable WRKY transcription factor 15 (WRKYDNA-binding protein 15) 4e-28 At5g28650 WRKY74 O.I. H.G. S.X.
0.18 13.7 Os04g0659500 At2g14160 - Protein phosphatase 2C-like domain containingprotein 8e-19 At4g31750 WIN2 (HOPW1-1-INTERACTING 2) O.I. H.G. S.X.
0.17 12.6 Os01g0296100 At2g14160 - - 1e-34 At5g14640 SK13 (SHAGGY-LIKE KINASE 13) O.I. H.G. S.X.
0.16 11.3 Os04g0665500 At2g14160 - SWIB/MDM2 domain containing protein 4e-1 At4g22360 SWIB complex BAF60b domain-containing protein O.I. H.G. S.X.
0.14 9.3 Os01g0833100 At2g14160 - NLI interacting factor domain containing protein 8e-7 At3g55960 NLI interacting factor (NIF) family protein O.I. H.G. S.X.
0.13 8.2 Os07g0669800 At2g14160 - Hypothetical protein 8e+0 At5g36080 unknown protein O.I. H.G. S.X.
0.13 8.2 Os04g0655600 At2g14160 - Conserved hypothetical protein 3e-1 At5g37200 zinc finger (C3HC4-type RING finger) family protein O.I. H.G. S.X.
0.13 8.2 Os05g0149800 At2g14160 - Calcium-binding EF-hand domain containing protein 4e-77 At5g18580 FASS (FASS 1) O.I. H.G. S.X.
0.10 5.7 Os03g0100400 At2g14160 - Repair endonuclease (Single stranded DNAendonuclease RAD1) 2e-9 At5g41150 UVH1 (ULTRAVIOLET HYPERSENSITIVE 1) O.I. H.G. S.X.
0.08 4.2 Os03g0851300 At2g14160 - Proteasome component region PCI domain containingprotein 5e-24 At5g09900 EMB2107 (EMBRYO DEFECTIVE 2107) O.I. H.G. S.X.

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.97	99.9	Os03g0100900	At2g14160	-	Eukaryotic protein of unknown function DUF862family protein	7e-4	At4g17486	unknown protein	O.I.	H.G.	S.X.
0.40	51.1	Os06g0142900	At2g14160	-	Conserved hypothetical protein	2e+0	At3g57310	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	O.I.	H.G.	S.X.
0.36	44.0	Os07g0507700	At2g14160	-	Bromodomain containing protein	8e-8	At3g27260	GTE8	O.I.	H.G.	S.X.
0.36	44.0	Os02g0638400	At2g14160	-	BRO1 domain containing protein	2e-1	At2g05510	glycine-rich protein	O.I.	H.G.	S.X.
0.32	36.3	Os02g0324300	At2g14160	-	Protein of unknown function DUF572 family protein	1e-14	At1g25682	cell cycle control protein-related	O.I.	H.G.	S.X.
0.31	34.5	Os07g0618600	At2g14160	-	Zn-finger, FYVE type domain containing protein	3e+0	At2g26210	ankyrin repeat family protein	O.I.	H.G.	S.X.
0.30	32.7	Os03g0268000	At2g14160	-	Protein phosphatase 1, catalytic gsmms subunit	9e-38	At5g59160	TOPP2	O.I.	H.G.	S.X.
0.30	32.7	Os03g0369800	At2g14160	-	Novel plant SNARE 13 (AtNPSN13)	2e-7	At1g48240	ATNPSN12	O.I.	H.G.	S.X.
0.29	31.1	Os06g0711600	At2g14160	-	Conserved hypothetical protein	8e-10	At2g16860	GCIP-interacting family protein	O.I.	H.G.	S.X.
0.28	31.1	Os10g0495000	At2g14160	-	KH, type 1 domain containing protein	2e-2	At5g15270	KH domain-containing protein	O.I.	H.G.	S.X.
0.27	27.5	Os02g0735700	At2g14160	-	Ankyrin repeat containing protein	6e-5	At2g01680	ankyrin repeat family protein	O.I.	H.G.	S.X.
0.27	27.5	Os01g0813900	At2g14160	-	ZIGA1 protein (Fragment)	7e-6	At1g08680	ZIGA4 (ARF GAP-like zinc finger-containing protein ZiGA4)	O.I.	H.G.	S.X.
0.26	25.6	Os02g0759800	At2g14160	-	GAMYB-binding protein (Fragment)	2e-21	At1g77180	chromatin protein family	O.I.	H.G.	S.X.
0.26	25.6	Os05g0562200	At2g14160	-	Drought induced 19 family protein	8e-1	At2g37860	LCD1 (LOWER CELL DENSITY 1)	O.I.	H.G.	S.X.
0.25	24.1	Os08g0127700	At2g14160	-	Conserved hypothetical protein	2e-48	At4g37120	SMP2	O.I.	H.G.	S.X.
0.25	24.1	Os01g0507500	At2g14160	-	Conserved hypothetical protein	2e-1	At1g71080	unknown protein	O.I.	H.G.	S.X.
0.25	24.1	Os06g0731400	At2g14160	-	Hypothetical protein	2e-1	At5g60820	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.
0.25	24.1	Os01g0184900	At2g14160	-	SSRP1 protein	9e-11	At3g28730	ATHMG (ARABIDOPSIS THALIANA HIGH MOBILITY GROUP)	O.I.	H.G.	S.X.
0.23	21.2	Os01g0280000	At2g14160	-	Exonuclease domain containing protein	4e+0	At2g34700	pollen Ole e 1 allergen and extensin family protein	O.I.	H.G.	S.X.
0.23	21.2	Os02g0438200	At2g14160	-	Cyclin, N-terminal domain containing protein	4e-1	At5g60680	unknown protein	O.I.	H.G.	S.X.
0.23	21.2	Os01g0680400	At2g14160	-	TAFII28-like protein domain containing protein	2e-6	At1g20000	TAF11b (TBP-ASSOCIATED FACTOR 11b)	O.I.	H.G.	S.X.
0.23	21.2	Os01g0852500	At2g14160	-	ELM2 domain containing protein	4e+0	At5g66550	Maf family protein	O.I.	H.G.	S.X.
0.23	21.2	Os05g0357800	At2g14160	-	Phospholipid/glycerol acyltransferase familyprotein	2e-4	At1g80950	phospholipid/glycerol acyltransferase family protein	O.I.	H.G.	S.X.
0.22	19.4	Os08g0472600	At2g14160	-	Alpha1,3-fucosyltransferase (Fragment)	2e-14	At1g49710	FUT12 (FUCOSYLTRANSFERASE 12)	O.I.	H.G.	S.X.
0.21	17.9	Os12g0597700	At2g14160	-	Probable WRKY transcription factor 15 (WRKYDNA-binding protein 15)	4e-28	At5g28650	WRKY74	O.I.	H.G.	S.X.
0.18	13.7	Os04g0659500	At2g14160	-	Protein phosphatase 2C-like domain containingprotein	8e-19	At4g31750	WIN2 (HOPW1-1-INTERACTING 2)	O.I.	H.G.	S.X.
0.17	12.6	Os01g0296100	At2g14160	-	-	1e-34	At5g14640	SK13 (SHAGGY-LIKE KINASE 13)	O.I.	H.G.	S.X.
0.16	11.3	Os04g0665500	At2g14160	-	SWIB/MDM2 domain containing protein	4e-1	At4g22360	SWIB complex BAF60b domain-containing protein	O.I.	H.G.	S.X.
0.14	9.3	Os01g0833100	At2g14160	-	NLI interacting factor domain containing protein	8e-7	At3g55960	NLI interacting factor (NIF) family protein	O.I.	H.G.	S.X.
0.13	8.2	Os07g0669800	At2g14160	-	Hypothetical protein	8e+0	At5g36080	unknown protein	O.I.	H.G.	S.X.
0.13	8.2	Os04g0655600	At2g14160	-	Conserved hypothetical protein	3e-1	At5g37200	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.
0.13	8.2	Os05g0149800	At2g14160	-	Calcium-binding EF-hand domain containing protein	4e-77	At5g18580	FASS (FASS 1)	O.I.	H.G.	S.X.
0.10	5.7	Os03g0100400	At2g14160	-	Repair endonuclease (Single stranded DNAendonuclease RAD1)	2e-9	At5g41150	UVH1 (ULTRAVIOLET HYPERSENSITIVE 1)	O.I.	H.G.	S.X.
0.08	4.2	Os03g0851300	At2g14160	-	Proteasome component region PCI domain containingprotein	5e-24	At5g09900	EMB2107 (EMBRYO DEFECTIVE 2107)	O.I.	H.G.	S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Vitis_vinifera
Zea_mays

Back to the CoP portal site

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Gene ID	Ta.25619.2.S1_a_at
Gene name
Homology with Arabidopsis	Similar to At2g14160: nucleic acid binding / nucleotide binding (HF=1e+0)
Module size	6 genes
NF	0.32
%ile	52.5

Co-expression analysis

Gene ID Ta.25619.2.S1_a_at Gene name Homology with ArabidopsisSimilar to At2g14160: nucleic acid binding / nucleotide binding (HF=1e+0) Module size 6 genes NF 0.32 %ile 52.5

Co-expressed genes

Click More genes

Specific experiments for the module

Inter-species module comparison

Select a plant to compare co-expressed genes between species.Arabidopsis_thalianaGlycine_maxHordeum_vulgarePopulus_trichocarpaVitis_viniferaZea_mays

Gene ID Ta.25619.2.S1_a_at

Gene name
Homology with Arabidopsis Similar to At2g14160: nucleic acid binding / nucleotide binding (HF=1e+0)

Module size 6 genes

NF 0.32

%ile 52.5

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Vitis_vinifera
Zea_mays