CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Ta.25619.2.S1_a_at

Gene name
Homology with Arabidopsis Similar to At2g14160: nucleic acid binding / nucleotide binding (HF=1e+0)

Module size 6 genes

NF 0.32

%ile 52.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.80 92.2 0.95 Ta.25619.2.S1_a_at CA609960 - - 1e+0 At2g14160 nucleic acid binding / nucleotide binding O.I. H.G. S.X.
0.61 82.0 0.94 TaAffx.129082.1.S1_x_at CK154420 - - 3e-6 At5g64460 - O.I. H.G. S.X.
0.50 72.4 0.94 Ta.3909.1.A1_x_at BJ274929 - - 8e-1 At3g01400 armadillo/beta-catenin repeat family protein O.I. H.G. S.X.
0.42 60.9 0.94 Ta.8149.1.A1_x_at CK205375 - - 7e-35 At4g14240 - O.I. H.G. S.X.
0.22 27.1 0.94 Ta.29331.2.S1_x_at CA611511 FD-like 6 protein - 1e+1 At5g06280 unknown protein O.I. H.G. S.X.
0.10 11.3 0.94 Ta.9677.1.S1_x_at CA652973 - - 3e+1 At5g26692 - O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
12.1 99.4 GSM314262 tissue type: seedling, root - rep3 GSE12508 Transcription patterns during wheat development
10.7 99.2 GSM314256 tissue type: germinating seed, root - rep3 GSE12508 Transcription patterns during wheat development
10.1 99.2 GSM314260 tissue type: seedling, root - rep1 GSE12508 Transcription patterns during wheat development
9.3 99.0 GSM314261 tissue type: seedling, root - rep2 GSE12508 Transcription patterns during wheat development
9.1 99.0 GSM314255 tissue type: germinating seed, root - rep2 GSE12508 Transcription patterns during wheat development
9.0 99.0 GSM314254 tissue type: germinating seed, root - rep1 GSE12508 Transcription patterns during wheat development
7.0 98.5 GSM298070 Leaf tissue of Paragon at 9 weeks post germination, biological rep 2 GSE11774 Expression data from cold treated wheat cultivars
6.7 98.4 GSM250900 TcLr34_3dpi_inoculated_rep3 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
5.6 97.8 GSM143521 Thatcher_Lr34 (susceptible), mock inoculated basal leaf, replication 1 GSE6227 Expression data from rust or mock inoculated, fully expanded flag leaf halves
5.2 97.5 GSM143508 Thatcher_Lr34 (resistant), mock inoculated basal leaf, replication 1 GSE6227 Expression data from rust or mock inoculated, fully expanded flag leaf halves

Inter-species module comparison

A co-expression module including the Arabidopsis gene, At2g14160, orthologous to the query gene, Ta.25619.2.S1_a_at

VF %ile Gene ID Repr. ID Gene Name Func. O.I. H.G. S.X. Other DB
0.32 35.7 At2g14160 815902 nucleic acid binding / nucleotide binding F:nucleotide binding, nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;PB O.I. H.G. S.X.
0.56 73.0 At2g18200 816335 unknown protein F:molecular_function unknown;P:biological_process unknown;C:mitochondrion;P O.I. H.G. S.X.
0.53 68.6 At3g04270 819582 unknown protein F:unknown;P:unknown;C:cellular_component unknown;P O.I. H.G. S.X.
0.52 67.4 At3g14820 820711 carboxylesterase/ hydrolase, acting on ester bonds / lipase F:lipase activity, hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:endomembrane system;PBOFM O.I. H.G. S.X.
0.40 50.8 At3g47910 823946 ubiquitin thiolesterase/ zinc ion binding F:ubiquitin thiolesterase activity, zinc ion binding;P:ubiquitin-dependent protein catabolic process;C:intracellular;MOFPBAV O.I. H.G. S.X.
0.39 48.4 At2g18070 816319 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. H.G. S.X.
0.38 46.7 At4g03440 827920 ankyrin repeat family protein F:protein binding;P:unknown;C:unknown;MOPBFVA O.I. H.G. S.X.
0.37 45.0 At1g69540 843289 AGL94 (AGAMOUS-LIKE 94) Encodes a member of the MIKC (MADS box, Keratin binding domain, and C terminal domain containing )family of transcriptional regulators. O.I. H.G. S.X.
0.36 43.6 At4g31030 829230 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. H.G. S.X.
0.36 43.6 At2g02550 814785 nuclease F:nuclease activity;P:DNA repair;C:unknown;MFOPA O.I. H.G. S.X.
0.36 43.6 At5g56800 835782 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PF O.I. H.G. S.X.
0.35 41.6 At5g17200 831584 glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein F:polygalacturonase activity;P:carbohydrate metabolic process;C:endomembrane system;FPBOMVA O.I. H.G. S.X.
0.31 33.8 At3g44780 823609 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;P O.I. H.G. S.X.
0.30 32.1 At5g39620 833958 AtRABG1 (Arabidopsis Rab GTPase homolog G1) F:GTP binding;P:protein transport, small GTPase mediated signal transduction;C:unknown;MOFPBVA O.I. H.G. S.X.
0.24 20.7 At5g37900 833769 seven in absentia (SINA) family protein F:ubiquitin-protein ligase activity, protein binding, zinc ion binding;P:multicellular organismal development, protein ubiquitination, ubiquitin-dependent protein catabolic process;C:nucleus, plasma membrane;MPO O.I. H.G. S.X.
0.22 17.5 At1g59725 842265 DNAJ heat shock protein, putative F:unfolded protein binding, heat shock protein binding;P:protein folding;C:cellular_component unknown;OBMFPAV O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Vitis_vinifera
Zea_mays

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