Co-expression analysis

Gene ID	Ta.25547.1.S1_at
Gene name
Homology with Arabidopsis	Similar to At4g08900: arginase (HF=5e-51)
Module size	27 genes
NF	0.17
%ile	30.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.98	99.9	0.85	Ta.25547.1.S1_at	BQ246620	-	-	5e-51	At4g08900	arginase	O.I.	H.G.	S.X.	Please select
0.35	49.8	0.91	Ta.25547.2.S1_at	CA598716	-	-	8e-14	At4g08900	arginase	O.I.	H.G.	S.X.	Please select
0.32	44.4	0.96	Ta.23783.1.S1_a_at	CD886943	-	-	3e-1	At1g20225	-	O.I.	H.G.	S.X.	Please select
0.24	30.3	0.97	Ta.19301.1.A1_at	CA702818	-	-	3e+0	At3g63390	unknown protein	O.I.	H.G.	S.X.	Please select
0.20	24.0	0.95	Ta.6106.1.S1_at	CK196915	-	-	2e-13	At1g80780	CCR4-NOT transcription complex protein, putative	O.I.	H.G.	S.X.	Please select
0.20	24.0	0.97	Ta.9524.1.S1_at	BQ162599	-	-	2e+0	At1g79130	auxin-responsive family protein	O.I.	H.G.	S.X.	Please select
0.19	22.4	0.95	Ta.4324.3.A1_x_at	CA723443	-	-	4e+0	At5g48860	unknown protein	O.I.	H.G.	S.X.	Please select
0.19	22.4	0.97	Ta.19301.1.A1_x_at	CA702818	-	-	3e+0	At3g63390	unknown protein	O.I.	H.G.	S.X.	Please select
0.18	21.0	0.95	Ta.5480.2.S1_at	BQ280758	Urate oxidase	-	2e-7	At2g26230	uricase / urate oxidase / nodulin 35, putative	O.I.	H.G.	S.X.	Please select
0.17	19.8	0.96	Ta.760.1.S1_at	CK153303	-	-	4e-1	At2g03870	small nuclear ribonucleoprotein, putative / snRNP, putative / Sm protein, putative	O.I.	H.G.	S.X.	Please select
0.17	19.8	0.92	Ta.28106.2.S1_at	BJ249413	-	-	3e-1	At4g33380	unknown protein	O.I.	H.G.	S.X.	Please select
0.16	18.2	0.96	Ta.7234.2.S1_x_at	BJ269596	-	-	2e-8	At2g45010	unknown protein	O.I.	H.G.	S.X.	Please select
0.15	17.1	0.98	Ta.9411.3.S1_x_at	CA499635	-	-	2e-4	At1g16810	unknown protein	O.I.	H.G.	S.X.	Please select
0.14	15.8	0.97	Ta.608.1.S1_x_at	BJ319046	-	-	2e-8	At5g09920	NRPB4	O.I.	H.G.	S.X.	Please select
0.14	15.8	0.92	Ta.25548.3.S1_x_at	CA737707	-	-	2e-2	At3g06000	leucine-rich repeat family protein	O.I.	H.G.	S.X.	Please select
0.13	14.6	0.96	TaAffx.26983.1.S1_at	CK161831	-	-	1e-2	At1g49770	RGE1 (RETARDED GROWTH OF EMBRYO 1)	O.I.	H.G.	S.X.	Please select
0.13	14.6	0.97	Ta.2308.1.S1_a_at	BJ297332	-	-	1e-7	At5g59140	SKP1 family protein	O.I.	H.G.	S.X.	Please select
0.13	14.6	0.98	Ta.608.1.S1_at	BJ319046	-	-	2e-8	At5g09920	NRPB4	O.I.	H.G.	S.X.	Please select
0.11	12.4	0.95	Ta.12548.1.S1_at	BQ238247	-	-	2e+0	At5g26630	MADS-box protein (AGL35)	O.I.	H.G.	S.X.	Please select
0.11	12.4	0.94	Ta.15012.1.S1_x_at	CA687115	-	-	4e+0	At5g23411	unknown protein	O.I.	H.G.	S.X.	Please select
0.11	12.4	0.97	Ta.7710.2.S1_x_at	CK199448	-	-	2e-3	At5g38650	proteasome maturation factor UMP1 family protein	O.I.	H.G.	S.X.	Please select
0.11	12.4	0.97	Ta.28321.2.S1_x_at	BQ805795	Ubiquitin-conjugating enzyme	-	3e-30	At4g27960	UBC9 (UBIQUITIN CONJUGATING ENZYME 9)	O.I.	H.G.	S.X.	Please select
0.11	12.4	0.98	Ta.22949.1.S1_a_at	CA656313	-	-	3e-1	At3g17220	PMEI2	O.I.	H.G.	S.X.	Please select
0.10	11.3	0.94	Ta.9896.1.S1_at	BQ166475	-	-	5e-1	At5g10390	histone H3	O.I.	H.G.	S.X.	Please select
0.10	11.3	0.97	Ta.2308.1.S1_x_at	BJ297332	-	-	1e-7	At5g59140	SKP1 family protein	O.I.	H.G.	S.X.	Please select
0.10	11.3	0.98	Ta.22949.3.S1_x_at	CA659124	-	-	1e+0	At3g17220	PMEI2	O.I.	H.G.	S.X.	Please select
0.09	10.4	0.97	Ta.1046.1.S1_at	CK216320	-	-	1e-2	At1g67600	-	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
7.8	98.7	GSM324488	Si- B+ rep2	GSE12936	Transcriptomic analysis of the effect of silicon on wheat plants infected or uninfected with powdery mildew
4.3	96.7	GSM324487	Si- B+ rep1	GSE12936	Transcriptomic analysis of the effect of silicon on wheat plants infected or uninfected with powdery mildew
2.9	94.0	GSM314270	tissue type: immature inflorescence - rep2	GSE12508	Transcription patterns during wheat development
2.8	93.6	GSM314276	tissue type: pistil, before anthesis - rep2	GSE12508	Transcription patterns during wheat development
2.8	93.6	GSM314277	tissue type: pistil, before anthesis - rep3	GSE12508	Transcription patterns during wheat development
2.5	92.5	GSM314275	tissue type: pistil, before anthesis - rep1	GSE12508	Transcription patterns during wheat development
2.5	92.5	GSM314269	tissue type: immature inflorescence - rep1	GSE12508	Transcription patterns during wheat development
2.5	92.5	GSM250898	TcLr1_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
2.5	92.5	GSM250900	TcLr34_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
2.4	92.0	GSM314285	tissue type: 22 DAP embryo - rep2	GSE12508	Transcription patterns during wheat development

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage