Co-expression analysis

Gene ID Ta.2554.3.A1_at
Gene name
Homology with ArabidopsisSimilar to At3g13672: seven in absentia (SINA) family protein (HF=3e-1)
Module size 6 genes
NF 0.54
%ile 80.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.4260.90.90Ta.2554.3.A1_atCA726606--3e-1At3g13672seven in absentia (SINA) family proteinO.I.H.G.S.X.
0.8393.40.91Ta.30947.2.S1_atCA735852--1e+0At5g02530RNA and export factor-binding protein, putativeO.I.H.G.S.X.
0.5678.60.91Ta.22346.2.A1_atCA741140--8e-1At2g21560unknown proteinO.I.H.G.S.X.
0.5374.90.91Ta.8245.2.S1_x_atCA680416--4e+0At5g13570DCP2 (DECAPPING 2)O.I.H.G.S.X.
0.4869.00.90TaAffx.29314.1.S1_atCA645755--1e+0At5g10880tRNA synthetase-related / tRNA ligase-relatedO.I.H.G.S.X.
0.4058.40.91TaAffx.53813.1.S1_atCA688853--5e+0At4g23432unknown proteinO.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
32.199.9GSM324488Si- B+ rep2GSE12936Transcriptomic analysis of the effect of silicon on wheat plants infected or uninfected with powdery mildewLink to GEO
16.399.6GSM324487Si- B+ rep1GSE12936Transcriptomic analysis of the effect of silicon on wheat plants infected or uninfected with powdery mildewLink to GEO
4.596.9GSM298092Crown tissue of Solstice at 3 weeks post germinationGSE11774Expression data from cold treated wheat cultivarsLink to GEO
4.496.8GSM298060Crown tissue of Harnesk at 3 weeks post germination, biological rep 2GSE11774Expression data from cold treated wheat cultivarsLink to GEO
4.296.6GSM298070Leaf tissue of Paragon at 9 weeks post germination, biological rep 2GSE11774Expression data from cold treated wheat cultivarsLink to GEO
3.996.1GSM298061Crown tissue of Harnesk at 5 weeks post germination, biological rep 1GSE11774Expression data from cold treated wheat cultivarsLink to GEO
3.896.0GSM298062Crown tissue of Harnesk at 5 weeks post germination, biological rep 2GSE11774Expression data from cold treated wheat cultivarsLink to GEO
3.695.6GSM298063Crown tissue of Harnesk at 9 weeks post germination, biological rep 1GSE11774Expression data from cold treated wheat cultivarsLink to GEO
3.595.4GSM298064Crown tissue of Harnesk at 9 weeks post germination, biological rep 2GSE11774Expression data from cold treated wheat cultivarsLink to GEO
3.595.4GSM298059Crown tissue of Harnesk at 3 weeks post germination, biological rep 1GSE11774Expression data from cold treated wheat cultivarsLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Vitis_vinifera
Zea_mays



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