Co-expression analysis

Gene ID	Ta.2554.3.A1_at
Gene name
Homology with Arabidopsis	Similar to At3g13672: seven in absentia (SINA) family protein (HF=3e-1)
Module size	6 genes
NF	0.54
%ile	80.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.42	60.9	0.90	Ta.2554.3.A1_at	CA726606	-	-	3e-1	At3g13672	seven in absentia (SINA) family protein	O.I.	H.G.	S.X.	Please select
0.83	93.4	0.91	Ta.30947.2.S1_at	CA735852	-	-	1e+0	At5g02530	RNA and export factor-binding protein, putative	O.I.	H.G.	S.X.	Please select
0.56	78.6	0.91	Ta.22346.2.A1_at	CA741140	-	-	8e-1	At2g21560	unknown protein	O.I.	H.G.	S.X.	Please select
0.53	74.9	0.91	Ta.8245.2.S1_x_at	CA680416	-	-	4e+0	At5g13570	DCP2 (DECAPPING 2)	O.I.	H.G.	S.X.	Please select
0.48	69.0	0.90	TaAffx.29314.1.S1_at	CA645755	-	-	1e+0	At5g10880	tRNA synthetase-related / tRNA ligase-related	O.I.	H.G.	S.X.	Please select
0.40	58.4	0.91	TaAffx.53813.1.S1_at	CA688853	-	-	5e+0	At4g23432	unknown protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
32.1	99.9	GSM324488	Si- B+ rep2	GSE12936	Transcriptomic analysis of the effect of silicon on wheat plants infected or uninfected with powdery mildew
16.3	99.6	GSM324487	Si- B+ rep1	GSE12936	Transcriptomic analysis of the effect of silicon on wheat plants infected or uninfected with powdery mildew
4.5	96.9	GSM298092	Crown tissue of Solstice at 3 weeks post germination	GSE11774	Expression data from cold treated wheat cultivars
4.4	96.8	GSM298060	Crown tissue of Harnesk at 3 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
4.2	96.6	GSM298070	Leaf tissue of Paragon at 9 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
3.9	96.1	GSM298061	Crown tissue of Harnesk at 5 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
3.8	96.0	GSM298062	Crown tissue of Harnesk at 5 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
3.6	95.6	GSM298063	Crown tissue of Harnesk at 9 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
3.5	95.4	GSM298064	Crown tissue of Harnesk at 9 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
3.5	95.4	GSM298059	Crown tissue of Harnesk at 3 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

Zea_mays

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