Co-expression analysis

Gene ID	Ta.25384.1.S1_at
Gene name
Homology with Arabidopsis	Similar to At2g40830: RHC1A (HF=6e+0)
Module size	6 genes
NF	0.55
%ile	81.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.67	86.3	0.89	Ta.25384.1.S1_at	CD879872	-	-	6e+0	At2g40830	RHC1A	O.I.	H.G.	S.X.	Please select
0.73	89.1	0.89	Ta.7882.1.S1_at	BQ160849	-	-	2e+0	At4g16750	DRE-binding transcription factor, putative	O.I.	H.G.	S.X.	Please select
0.56	78.6	0.87	Ta.7882.1.S1_x_at	BQ160849	-	-	2e+0	At4g16750	DRE-binding transcription factor, putative	O.I.	H.G.	S.X.	Please select
0.53	74.9	0.90	Ta.1800.1.S1_at	BE445382	-	-	4e+0	At3g55646	unknown protein	O.I.	H.G.	S.X.	Please select
0.38	54.7	0.87	Ta.7176.2.S1_x_at	CK196344	-	-	8e-1	At5g35230	unknown protein	O.I.	H.G.	S.X.	Please select
0.38	54.7	0.89	Ta.18807.1.A1_at	CA642371	-	-	8e-2	At3g48460	GDSL-motif lipase/hydrolase family protein	O.I.	H.G.	S.X.	Please select

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Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
17.4	99.6	GSM343688	Wheat var. Kennedy_Fp inoculated_rep3	GSE13660	Gene expression analysis of the wheat response to infection by Fusarium pseudograminearum
15.5	99.6	GSM343687	Wheat var. Kennedy_Fp inoculated_rep2	GSE13660	Gene expression analysis of the wheat response to infection by Fusarium pseudograminearum
14.3	99.5	GSM343682	Wheat var. Kennedy_control_rep2	GSE13660	Gene expression analysis of the wheat response to infection by Fusarium pseudograminearum
11.2	99.3	GSM343685	Wheat var. Kennedy_control_rep3	GSE13660	Gene expression analysis of the wheat response to infection by Fusarium pseudograminearum
10.3	99.2	GSM343678	Wheat var. Kennedy_control_rep1	GSE13660	Gene expression analysis of the wheat response to infection by Fusarium pseudograminearum
9.1	99.0	GSM314262	tissue type: seedling, root - rep3	GSE12508	Transcription patterns during wheat development
6.3	98.2	GSM343686	Wheat var. Kennedy_Fp inoculated_rep1	GSE13660	Gene expression analysis of the wheat response to infection by Fusarium pseudograminearum
6.2	98.1	GSM314261	tissue type: seedling, root - rep2	GSE12508	Transcription patterns during wheat development
6.0	98.0	GSM298072	Crown tissue of Paragon at 3 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
6.0	98.0	GSM314260	tissue type: seedling, root - rep1	GSE12508	Transcription patterns during wheat development

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

Zea_mays

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