Co-expression analysis

Gene ID	Ta.25380.1.A1_x_at
Gene name
Homology with Arabidopsis	Similar to At1g65720: unknown protein (HF=5e-3)
Module size	6 genes
NF	0.39
%ile	62.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.50	72.4	0.96	Ta.25380.1.A1_x_at	CD453533	-	-	5e-3	At1g65720	unknown protein	O.I.	H.G.	S.X.	Please select
0.61	82.0	0.97	TaAffx.81795.1.S1_at	CA644276	-	-	2e-4	At5g57320	villin, putative	O.I.	H.G.	S.X.	Please select
0.33	46.9	0.97	Ta.14195.3.S1_x_at	CA640695	-	-	4e+0	At4g34450	coatomer gamma-2 subunit, putative / gamma-2 coat protein, putative / gamma-2 COP, putative	O.I.	H.G.	S.X.	Please select
0.33	46.9	0.97	Ta.6867.3.A1_a_at	BJ228637	-	-	1e+0	At1g17147	-	O.I.	H.G.	S.X.	Please select
0.31	42.7	0.97	Ta.3584.2.S1_a_at	CA601548	-	-	1e+0	At5g25102	unknown protein	O.I.	H.G.	S.X.	Please select
0.20	24.0	0.96	Ta.6968.2.S1_a_at	CA604796	-	-	2e-33	At5g03520	ATRAB8C	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
3.3	95.0	GSM314261	tissue type: seedling, root - rep2	GSE12508	Transcription patterns during wheat development
2.8	93.6	GSM314260	tissue type: seedling, root - rep1	GSE12508	Transcription patterns during wheat development
2.7	93.3	GSM324492	Si+ B- rep3	GSE12936	Transcriptomic analysis of the effect of silicon on wheat plants infected or uninfected with powdery mildew
2.7	93.3	GSM314262	tissue type: seedling, root - rep3	GSE12508	Transcription patterns during wheat development
2.5	92.5	GSM298072	Crown tissue of Paragon at 3 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
2.4	92.0	GSM111185	genotype C22 developing seed at 5 days after anthesis, biological rep2	GSE4935	wheat expression level polymorphism study 39 genotypes 2 biological reps
2.4	92.0	GSM324484	Si- B- rep1	GSE12936	Transcriptomic analysis of the effect of silicon on wheat plants infected or uninfected with powdery mildew
2.4	92.0	GSM314254	tissue type: germinating seed, root - rep1	GSE12508	Transcription patterns during wheat development
2.4	92.0	GSM143511	Thatcher_Lr34 (resistant), mock inoculated distal leaf, replication 1	GSE6227	Expression data from rust or mock inoculated, fully expanded flag leaf halves
2.4	92.0	GSM143512	Thatcher_Lr34 (resistant), mock inoculated distal leaf, replication 2	GSE6227	Expression data from rust or mock inoculated, fully expanded flag leaf halves

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage